Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F12F6.3
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Query: F12F6.3 CE24898 locus:rib-1 MULTIPLE EXOSTOSES HOMOLOG 1 status:Partially_confirmed SW:O01704 protein_id:CAB61014.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Exostosin Exostosin family 404.6 9.3e-118 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Exostosin 1/1 47 346 .. 1 407 [] 404.6 9.3e-118
Alignments of top-scoring domains:
Exostosin: domain 1 of 1, from 47 to 346: score 404.6, E = 9.3e-118
*->VYvYdLPsrFnfdllencstiseeieDmCpyiaNsGlgPpiknvevk
VY++++ +rF + ++ ++++ ++
F12F6.3 47 VYIHPMEKRFEESPQSVIYSKILKH---------------------- 71
YPgglhrqhsswYatnqflleveiFhekmlssssrcrTkDPseAdlffVP
+le+ ++ +T+DP+eA++f++
F12F6.3 72 ------------------FLES----------NH--YTNDPNEACIFLL- 90
fyasldllrllgnpinaknsaeksssslrdllqaelvkwlksyp.syWnR
++d+ + ++++++ +++++ ++++s+++s Wn
F12F6.3 91 ---GIDTTD---------------RDVRSQNYVKNVNDYIESLDpSVWN- 121
ssGrDHvivnghpggvkdfrryttnkldwgtsllllsessnlTmLsiRee
+Gr+H+i+n ++g +f++y++++l+++t ++++ +s++ e
F12F6.3 122 -NGRNHLIFNFYHG---TFPDYDDHNLNFDTGEAMIARASSS-------E 160
eqfrpgkDvaipPyptyfhPrslgeilswqgngirpekRkyLlsFaGalr
++f+ ++Dv++ P++++ hP++ e++s++++ +RkyL+sF+G+++
F12F6.3 161 NNFIKVFDVSL-PLFHENHPYEIKESKSERNDDRIENQRKYLVSFKGKRY 209
pklggslprlresgliRgelidlltnskkvclfldvdakqqleltckNqk
++++gs++r+++++l++g++i+++t++k+ +++++
F12F6.3 210 VYGIGSGTRNLVHHLHNGDDIVMVTTCKHNNDWQVY-------------- 245
qQDgrCetgivnchgpldymelmrnStFCLqlPpGdrptspRlfDailaG
QD+rC+ ++ + +++++y el++nStFCL+ P+G+r++s+R+++ +++G
F12F6.3 246 -QDDRCQRDNDE-YDRWEYDELLANSTFCLV-PRGRRLGSFRFLETLRSG 292
CIPViisDgSAYiqLPFsdvlDwskfSVfvpekdvlergvslkeiLrsIp
C+PV+isD+ ++LPFs+++Dw++++++v+e+d+l+ ++e+L+s +
F12F6.3 293 CVPVVISDS---WILPFSETIDWNSAAIVVAERDALS----IPELLMSTS 335
eerilemreqv<-*
++r++e+re
F12F6.3 336 RRRVKELRESA 346