Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10G2.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F10G2.1 CE27945 status:Partially_confirmed TR:Q22957 protein_id:AAG24056.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF19 Domain of unknown function DUF19 279.6 1.2e-94 1
DUF619 Protein of unknown function (DUF619) 4.0 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF619 1/1 62 76 .. 214 228 .] 4.0 5.1
DUF19 1/1 33 200 .. 1 173 [] 279.6 1.2e-94
Alignments of top-scoring domains:
DUF619: domain 1 of 1, from 62 to 76: score 4.0, E = 5.1
*->nldrisklmksfrki<-*
+++++++++ks++++
F10G2.1 62 DKNQVNEFEKSCVSF 76
DUF19: domain 1 of 1, from 33 to 200: score 279.6, E = 1.2e-94
*->CTevtslkatkClyrlgdFlekvdfLDmsdkkelkkFkkSCdslasC
CT+ ++++a+ C++r+ dF+ k+++LDm+dk+ +++F kSC s+a+C
F10G2.1 33 CTKTEGFQAIACVLRMADFAQKIEKLDMDDKNQVNEFEKSCVSFANC 79
fetLeClpksedekkeavktikkyCdavqyfsddFvpCsdKLealkkkSe
fetL+C+p ++ ekk ++ik+yCdav+y+ +dF++Cs+KLe+ k S+
F10G2.1 80 FETLQCGPEDPAEKKIN-NMIKNYCDAVVYVAKDFADCSEKLEN--KNST 126
CfkdWDPfpnkihdekdkkKeeklkkeaCKnyFGKDNCMKKeItETCGee
C+ +WDPfp+ i+ e+d+kK+ek+ eaCKnyFGKDNC+KKeItE C+e
F10G2.1 127 CYQNWDPFPDAIDEETDEKKKEKMLQEACKNYFGKDNCLKKEITEKCSET 176
eWqgfrkhFiglasstilkqCDFSrL<-*
eW+gfr+hFig s+il +CDF +
F10G2.1 177 EWKGFRDHFIG--ISNILLECDFRNI 200