Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10D7.5a
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Query: F10D7.5a CE31337 D. melanogaster finger protein neuralized status:Partially_confirmed TR:Q95QL9 protein_id:AAM81090.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 21.0 1.4e-06 1
ZnF_P11 P-11 zinc finger 5.0 4.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 583 621 .. 1 50 [] 21.0 1.4e-06
ZnF_P11 1/1 595 630 .. 15 50 .] 5.0 4.1
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 583 to 621: score 21.0, E = 1.4e-06
*->CrICleelkepsndfplilpCgHsGslkyfCrsClerWlsgnttvkC
C IC++ + + + + CgH ++C++C +r l ++ t C
F10D7.5a 583 CTICMDAPVNSV-----LYTCGHM----CMCFECGRRLLTTKGT--C 618
plC<-*
p+C
F10D7.5a 619 PIC 621
ZnF_P11: domain 1 of 1, from 595 to 630: score 5.0, E = 4.1
*->LveCsdHYLClrClqllLsvSerCpiCkkPLPTklr<-*
L +C +C C lL CpiC+ P ++
F10D7.5a 595 LYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIK 630