Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10C2.6
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Query: F10C2.6 CE31906 locus:drs-2 aspartyl-tRNA synthetase status:Partially_confirmed TR:P90831 protein_id:CAB04081.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tRNA-synt_2 tRNA synthetases class II (D, K and N) 124.7 1.7e-33 2
tRNA_anti OB-fold nucleic acid binding domain 49.3 2.2e-12 1
Rota_NS26 Rotavirus NS26 4.0 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tRNA_anti 1/1 40 119 .. 1 89 [] 49.3 2.2e-12
Rota_NS26 1/1 265 271 .. 217 223 .] 4.0 4.7
tRNA-synt_2 1/2 135 272 .. 1 161 [. 69.6 6.1e-18
tRNA-synt_2 2/2 478 563 .. 290 380 .] 55.2 4.9e-14
Alignments of top-scoring domains:
tRNA_anti: domain 1 of 1, from 40 to 119: score 49.3, E = 2.2e-12
*->VtvaGrVhsvrdlgtfknadggggkliFltLrDgtgGriqvvvfnde
V+v+G+++ +r + F++LrD + G++q+ + +
F10C2.6 40 VSVMGWLSHKRMDR-------------FFVLRDAY-GSVQAKISASS 72
vpeleklak.lkeGdvVgVtGkvkkrpe......atGelellveeievl<
+l +l+k++ ++vV+V G v+ r+ +++++ +tG++e+ vee++vl
F10C2.6 73 --KLQSLLKdIPYESVVRVDGIVVDRGDnrnskmKTGDIEIDVEELTVL 119
-*
F10C2.6 - -
Rota_NS26: domain 1 of 1, from 265 to 271: score 4.0, E = 4.7
*->iQLIEDl<-*
+QLIED+
F10C2.6 265 MQLIEDM 271
tRNA-synt_2: domain 1 of 2, from 135 to 272: score 69.6, E = 6.1e-18
*->dqetRyrqRyldLrmneesravfrvRskiiaaiRrfFdek.GFlEVe
+ tR+ +Ry+dLr +++++ +r+Rs+ ++ +Rrf+ ek+GF+ Ve
F10C2.6 135 NERTRLKYRYIDLR-SDKLQKSLRLRSEFVHNVRRFLVEKsGFVDVE 180
TPmlseavstdieGGGEmFRVTLDLEnLprvsagatpFitsy...fgLdk
TP+l ++G ga +F+++ ++++ +
F10C2.6 181 TPTL----FRRTPG-------------------GAAEFVVPApspNQ--G 205
elY.LriSpeLylkrLivgGlerVyeIgrvFRnEkgnthrHnpEFTmlEf
+Y+L +Sp+ +++ L vg ++r ++I r+ R E g pEFT +++
F10C2.6 206 LAYsLPQSPQQFKQLLMVGAIDRYFQIARCYRDE-GSKGDRQPEFTQVDV 254
YmAfadhyhDLmeltEeLl<-*
+m f + + +m+l+E+++
F10C2.6 255 EMSFTT-QNGVMQLIEDMI 272
tRNA-synt_2: domain 2 of 2, from 478 to 563: score 55.2, E = 4.9e-14
*->fdlfipGrGEIanGfqeLnDpddqreRFeeQarakaaGddeadeide
+dl i G+ E ++G+ +++ + qr+ + +++de e
F10C2.6 478 YDLVINGV-EMGGGSIRIENSEIQRHVLK-------VLGEPTDE-ME 515
dfvdaLeYGmPPhaGlGlGiDRliMlltdahn....IRDViLFPrdrp<-
++aL +G PPh+G++lG+DR+++ lt n+ +++RDVi FP ++
F10C2.6 516 HLLNALSHGAPPHGGFALGLDRFVAMLTSDGNpltpVRDVIAFPKTKN 563
*
F10C2.6 - -