Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F10B5.1
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Query:  F10B5.1  CE01543  locus:rpl-10 ribosomal protein L10 (QM protein) status:Confirmed SW:Q09533 protein_id:CAA88308.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Ribosomal_L10e Ribosomal L10                            478.0   6.3e-142   1
Ribosomal_L16  Ribosomal protein L16                      8.7       0.21   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L16    1/1     120   166 ..    88   132 .]     8.7     0.21
Ribosomal_L10e   1/1       1   176 [.     1   176 []   478.0 6.3e-142

Alignments of top-scoring domains:
Ribosomal_L16: domain 1 of 1, from 120 to 166: score 8.7, E = 0.21
                   *->GnpeyWVavVkpGkILFEidG..VseevAreAlrlAasKLPiktkFV
                      G p++ Va+V  G ILF +  ++ + + A eA+r A +K P +  +V
     F10B5.1   120    GKPQGLVARVDIGDILFSMRIkeGNVKHAIEAFRRAKFKFPGRQIIV 166

                   <-*

     F10B5.1     -     -

Ribosomal_L10e: domain 1 of 1, from 1 to 176: score 478.0, E = 6.3e-142
                   *->MaRRPARCYRyiknkPYpksrYcrGVPdaKiRiFDlGnkkanvDeFP
                      M+RRPARCYRyiknkPYpksr+crGVPdaKiRiFDlGnk+anvD+FP
     F10B5.1     1    MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFP 47

                   lcvhLVsnEreqisseALEAARiaANKYmvknaGkdgyhLrvRvhPFHvl
                   +cvh++snEre++sseALEAARi+ANKYmvkn+Gkdg+hLrvR+hPFHv+
     F10B5.1    48 ACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVT 97

                   RinKMlsCAGADRLqqGMRgAFGKPqGlaARVkiGqillSVrvkpehfav
                   RinKMlsCAGADRLq+GMRgA+GKPqGl+ARV+iG+il+S+r+k++++++
     F10B5.1    98 RINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKH 147

                   AkEALRRAayKfPgrqkIvvskkwgftkl<-*
                   A+EA+RRA++KfPgrq+Iv+s+kwgftk+
     F10B5.1   148 AIEAFRRAKFKFPGRQIIVSSRKWGFTKW    176



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