Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F10B5.1
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Query: F10B5.1 CE01543 locus:rpl-10 ribosomal protein L10 (QM protein) status:Confirmed SW:Q09533 protein_id:CAA88308.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_L10e Ribosomal L10 478.0 6.3e-142 1
Ribosomal_L16 Ribosomal protein L16 8.7 0.21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L16 1/1 120 166 .. 88 132 .] 8.7 0.21
Ribosomal_L10e 1/1 1 176 [. 1 176 [] 478.0 6.3e-142
Alignments of top-scoring domains:
Ribosomal_L16: domain 1 of 1, from 120 to 166: score 8.7, E = 0.21
*->GnpeyWVavVkpGkILFEidG..VseevAreAlrlAasKLPiktkFV
G p++ Va+V G ILF + ++ + + A eA+r A +K P + +V
F10B5.1 120 GKPQGLVARVDIGDILFSMRIkeGNVKHAIEAFRRAKFKFPGRQIIV 166
<-*
F10B5.1 - -
Ribosomal_L10e: domain 1 of 1, from 1 to 176: score 478.0, E = 6.3e-142
*->MaRRPARCYRyiknkPYpksrYcrGVPdaKiRiFDlGnkkanvDeFP
M+RRPARCYRyiknkPYpksr+crGVPdaKiRiFDlGnk+anvD+FP
F10B5.1 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFP 47
lcvhLVsnEreqisseALEAARiaANKYmvknaGkdgyhLrvRvhPFHvl
+cvh++snEre++sseALEAARi+ANKYmvkn+Gkdg+hLrvR+hPFHv+
F10B5.1 48 ACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVT 97
RinKMlsCAGADRLqqGMRgAFGKPqGlaARVkiGqillSVrvkpehfav
RinKMlsCAGADRLq+GMRgA+GKPqGl+ARV+iG+il+S+r+k++++++
F10B5.1 98 RINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKH 147
AkEALRRAayKfPgrqkIvvskkwgftkl<-*
A+EA+RRA++KfPgrq+Iv+s+kwgftk+
F10B5.1 148 AIEAFRRAKFKFPGRQIIVSSRKWGFTKW 176