Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09G8.8
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Query: F09G8.8 CE23637 status:Partially_confirmed TN:AAK84522 protein_id:AAK84522.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
vwa von Willebrand factor type A domain 106.8 1.4e-32 2
lectin_c Lectin C-type domain 17.1 0.0057 1
Ku_N Ku70/Ku80 N-terminal alpha/beta domain 4.4 4.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
vwa 1/2 75 86 .. 1 12 [. 7.8 0.16
Ku_N 1/1 334 345 .. 1 13 [. 4.4 4.1
vwa 2/2 333 515 .. 1 189 [] 97.6 1.1e-29
lectin_c 1/1 567 669 .. 19 125 .] 17.1 0.0057
Alignments of top-scoring domains:
vwa: domain 1 of 2, from 75 to 86: score 7.8, E = 0.16
*->DivFllDgSgSi<-*
Di++++DgS+S+
F09G8.8 75 DIIIVVDGSSSM 86
Ku_N: domain 1 of 1, from 334 to 345: score 4.4, E = 4.1
*->aivFviDaspaMf<-*
i+FviD+s+ M+
F09G8.8 334 -IIFVIDVSEGMG 345
vwa: domain 2 of 2, from 333 to 515: score 97.6, E = 1.1e-29
*->DivFllDgSgSigeenrFekvkdfvkklveknld...igpdgtrvgl
Di+F++D+S+ +g+ + + vk +++lv+ +++ ++ +++++vgl
F09G8.8 333 DIIFVIDVSEGMGQGG-LMMVKAEINTLVG-QMSldpNIQKHVQVGL 377
vqyssdvrtefsLndytskddllaai.....lknlrylgGgTnNtgkALk
+ ys+ + ++f+ dyt++d+ +++ ++++l ++ +++ n ++++L+
F09G8.8 378 IKYSDKAEVVFKPSDYTNEDEFTEDLwsdprLEDVDEKSDEVN-LHLGLQ 426
yalenlfsstMlkngraagsRpenapkvlillTDGksndgpdve.aaaal
a+++ s+ R +++kv++++ ++++g d+++++aa+
F09G8.8 427 QAAKMTASM-----------RN-GVRKVIVVYAASYNDEGNDDArQIAAN 464
rrk.giivfavGvdadeeeLr.iasepeseghvfyvedfddlwlqlkdlq
r++g ++++v++ + e + ++e++++ +++++f+d++l +++
F09G8.8 465 IREtGYAIITVAF-VEPESSNlVMKIGEIASPRMNFTSFRDDLLVE-QME 512
eal<-*
+al
F09G8.8 513 DAL 515
lectin_c: domain 1 of 1, from 567 to 669: score 17.1, E = 0.0057
*->AHLvsIqsaeEqsfvvafltsltkk.......sntyaWIGLtdinte
+HLv ++s+ + fl+++ ++ ++++ n ++ IG + +
F09G8.8 567 GHLVYVNSELKN----TFLNQFYMDnwypenqENPNYDIGYYYDQAT 609
gtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCve..iytdtdfl
++++w ++g n + nWa+g P+ +++ dCv+ ++ +d+ ++
F09G8.8 610 KKFIW----VNGVTNNPYSNWATGHPDVKQG-----DCVMakLLKDSKND 650
aGkWnDepCdskl.pyvCef<-*
++Wn+++C s +++ +C+
F09G8.8 651 -FRWNSVSCTSEYgRGLCQE 669