Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F09F7.7a
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Query:  F09F7.7a  CE30655    status:Confirmed TN:AAM22063 protein_id:AAM22063.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily            40.8      4e-10   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
2OG-FeII_Oxy   1/1     164   259 ..     1   121 []    40.8    4e-10

Alignments of top-scoring domains:
2OG-FeII_Oxy: domain 1 of 1, from 164 to 259: score 40.8, E = 4e-10
                   *->naeslrvnyYppvPcpqelaskktsspdlglglgpHtDde....nri
                      +++ ++ + Y+               + +   +++H Dd+   +nr+
    F09F7.7a   164    QPFEMCNLEYE---------------EVKKSAIEMHQDDMwiwgNRL 195

                   lTillqlsdvdekdggggLqfpkdggwidvppgPg.alvvniGdllqvls
                   ++i+l         +g+++ +        ++ +   ++v ++  +l+++
    F09F7.7a   196 ISINLI--------NGSVMTLS-------NDNKSFlCYVHMPHRSLLCMA 230

                   nGryksvlHrVlpntgegeRiSiafflrp<-*
                   ++ +++++H+Vl+++ +g Ri+++++  +
    F09F7.7a   231 DECRYDWKHGVLAHHIRGRRIALTMREAA    259



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