Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F09F7.7a
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Query: F09F7.7a CE30655 status:Confirmed TN:AAM22063 protein_id:AAM22063.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily 40.8 4e-10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
2OG-FeII_Oxy 1/1 164 259 .. 1 121 [] 40.8 4e-10
Alignments of top-scoring domains:
2OG-FeII_Oxy: domain 1 of 1, from 164 to 259: score 40.8, E = 4e-10
*->naeslrvnyYppvPcpqelaskktsspdlglglgpHtDde....nri
+++ ++ + Y+ + + +++H Dd+ +nr+
F09F7.7a 164 QPFEMCNLEYE---------------EVKKSAIEMHQDDMwiwgNRL 195
lTillqlsdvdekdggggLqfpkdggwidvppgPg.alvvniGdllqvls
++i+l +g+++ + ++ + ++v ++ +l+++
F09F7.7a 196 ISINLI--------NGSVMTLS-------NDNKSFlCYVHMPHRSLLCMA 230
nGryksvlHrVlpntgegeRiSiafflrp<-*
++ +++++H+Vl+++ +g Ri+++++ +
F09F7.7a 231 DECRYDWKHGVLAHHIRGRRIALTMREAA 259