Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F09E5.1
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Query:  F09E5.1  CE02604  locus:pkc-3 Protein kinase C status:Confirmed TR:Q19266 protein_id:AAA79341.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
pkinase         Protein kinase domain                   254.5    1.5e-72   1
pkinase_C       Protein kinase C terminal domain         97.7    7.5e-29   1
PB1             PB1 domain                               81.5    1.3e-21   1
DAG_PE-bind     Phorbol esters/diacylglycerol binding    42.1    1.7e-09   1
Herpes_DNAp_acc Herpes DNA replication accessory fact     5.8       0.81   1
Myelin_PLP      Myelin proteolipid protein (PLP or li     2.7          5   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Myelin_PLP        1/1      38    53 ..   273   288 .]     2.7        5
PB1               1/1      12    95 ..     1    85 []    81.5  1.3e-21
Herpes_DNAp_acc   1/1     153   176 ..     1    24 [.     5.8     0.81
DAG_PE-bind       1/1     128   177 ..     1    51 []    42.1  1.7e-09
pkinase           1/1     253   522 ..     1   294 []   254.5  1.5e-72
pkinase_C         1/1     526   590 ..     1    70 []    97.7  7.5e-29

Alignments of top-scoring domains:
Myelin_PLP: domain 1 of 1, from 38 to 53: score 2.7, E = 5
                   *->yAVLKflgRkdkytkf<-*
                      +A LK+++++ k +++
     F09E5.1    38    FALLKDACKQHKKQDI    53

PB1: domain 1 of 1, from 12 to 95: score 81.5, E = 1.3e-21
                   *->tvdvKlrYgggirrilsvsrdisfeeLrskvakrfgl....tfklkY
                      ++++K r++g ++  l+ ++++ ++++ +++++ ++++++++++ k+
     F09E5.1    12    DIKLKTRFQGQVVV-LYARPPLILDDFFALLKDACKQhkkqDITVKW 57

                   pDeDgDdlVsissDeDLeeaieeyrsllsegsktlrlfvfpa<-*
                   +DeDg d++si s+++L+ea+++++s+   +  +l+++vf+
     F09E5.1    58 IDEDG-DPISIDSQMELDEAVRCLNSS---QEAELNIHVFVG    95

Herpes_DNAp_acc: domain 1 of 1, from 153 to 176: score 5.8, E = 0.81
                   *->tyslrlkveaLaqlsKiYdHiKsh<-*
                       +++r + ++L+++ K++ H+ +h
     F09E5.1   153    RQGFRCVDCRLCVHKKCHRHVRTH    176

DAG_PE-bind: domain 1 of 1, from 128 to 177: score 42.1, E = 1.7e-09
                   *->HrFkrttfyksptfCdhCgellwglakQGlkCsnCglnvHkrChekV
                      HrF+++++ ++   C  C + +wg+++QG++C +C+l vHk+Ch+ V
     F09E5.1   128    HRFQAKRL-NRRIQCFICHDYIWGIGRQGFRCVDCRLCVHKKCHRHV 173

                   ptnC<-*
                    t C
     F09E5.1   174 RTHC    177

pkinase: domain 1 of 1, from 253 to 522: score 254.5, E = 1.5e-72
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkk....ekesikek
                      ++ll ++G+Gs++kV +a+h+ +t +i+A+Ki+kk+  +e+e+i++
     F09E5.1   253    FRLLTVIGRGSYAKVVQAEHV-STRQIYAIKIIKKemfnEDEDIDW- 297

                   rflrEiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrr
                    +++E ++    s+ p++v l+  f+ t+++l +v E+++gGdL+ ++++
     F09E5.1   298 -VQTEKSVFEAASnYPFLVGLHSCFQ-TESRLFFVIEFVPGGDLMFHMQQ 345

                   nggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKi
                   ++ +l+e++a+++  +i  +l +LHs+gi++RDLK +N+L+d + g++K+
     F09E5.1   346 QR-KLPEEHARFYSGEIILALHFLHSRGIIYRDLKLDNVLIDAE-GHIKL 393

                   aDFGLArlle.sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGvi
                   +D G++++  +++  ++tf+GTp+Y+ APE+ l+g++y+  vD+W+lGv+
     F09E5.1   394 TDYGMCKENIkDGDLTSTFCGTPNYI-APEI-LRGDEYGFSVDWWALGVL 441

                   LyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktridple
                   ++E++ g                          ++Pf+   + ++++++e
     F09E5.1   442 MFEMMAG--------------------------RSPFDIVGMQNSEENTE 465

                   elfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpG.....satak
                    ++  i    + +++p+++S  +  +lk+ LnkDP++R+G + +  +  +
     F09E5.1   466 DYLFQIIL-ERQIRIPRSLSVRASGILKGFLNKDPTERLGckldiNEGLR 514

                   eilnhpwf<-*
                   ++++h +f
     F09E5.1   515 DMKEHQFF    522

pkinase_C: domain 1 of 1, from 526 to 590: score 97.7, E = 7.5e-29
                   *->reIdWdkLEnkeiePPFKPkiksprDtsNFDkeFTrekPvLTPvDsv
                        IdW+ LE+k + PP+ P + s+rD+  FD +FT+e P+L+P++ +
     F09E5.1   526    --IDWEALEQKAVAPPYHPAVESDRDLTHFDHQFTDELPQLSPDNPD 570

                   lirsiDQeeFrGFSYvnsPersf<-*
                   +i++iDQ+eF GF+Yvn P
     F09E5.1   571 VIARIDQSEFDGFEYVN-PL--Q    590



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