Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F08D12.7
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F08D12.7 CE27927 status:Partially_confirmed TR:P91230 protein_id:AAK68305.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF263 Domain of unknown function DUF263 200.7 1.1e-57 2
DUF19 Domain of unknown function DUF19 5.8 0.25 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF19 1/1 53 106 .. 30 88 .. 5.8 0.25
DUF263 1/2 93 197 .. 1 107 [] 200.8 1.1e-57
DUF263 2/2 304 321 .. 49 67 .. 0.4 1e+02
Alignments of top-scoring domains:
DUF19: domain 1 of 1, from 53 to 106: score 5.8, E = 0.25
*->dkkelkkFkkSCdslasCfetLeClpksedekkeavktikkyCdavq
+ ++lkk+ + C ++++Cf++ C+ + + ++++++++Cd +
F08D12.7 53 KAETLKKMNDLCTDIKTCFKAATCK-----KGAHTYESMRDACDGLE 94
yfsddFvpCsdK<-*
+ + pC +K
F08D12.7 95 LMTGNVQPCMTK 106
DUF263: domain 1 of 2, from 93 to 197: score 200.8, E = 1.1e-57
*->ieflnsevknCmakfykavyngnyYnCtkefDFLtkDLttRReAyts
+e+++++v++Cm+kfy+avyn++y nCt+e+D+Lt+DL++RR++yts
F08D12.7 93 LELMTGNVQPCMTKFYLAVYNEKY-NCTGERDYLTDDLPARRVSYTS 138
GKeCfleIvrereCdeealeylssnFnYeelVdiLsikPdgekDaCssly
G++Cf++++++ eC+ee++++lssnFnY++l+++L+++P+g++D+C++l+
F08D12.7 139 GRFCFFQVIGK-ECSEETVAILSSNFNYDNLINVLTTVPGGFQDNCNRLH 187
heLnklrCda<-*
h++nkl+C+a
F08D12.7 188 HAFNKLQCEA 197
DUF263: domain 2 of 2, from 304 to 321: score 0.4, E = 1e+02
*->KeCfleIvrereCdeeale<-*
KeC ++++ + C+++a+e
F08D12.7 304 KECTRTVMEAS-CGKKAVE 321