Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F07G11.9
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F07G11.9 CE09229 status:Partially_confirmed TR:O16237 protein_id:AAG24054.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LysM LysM domain 519.8 1.9e-152 13
Glyco_hydro_18 Glycosyl hydrolases family 18 458.4 5.9e-134 1
ARID ARID/BRIGHT DNA binding domain 7.9 0.69 1
KOW KOW motif 7.8 3.3 2
NAD_binding_1 Oxidoreductase NAD-binding domain 7.3 0.75 1
TOBE TOBE domain 6.1 3.8 1
Fz Fz domain 4.8 1.1 1
Trypan_glycop Trypanosome variant surface glycoprote 3.3 4.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fz 1/1 52 65 .. 134 150 .] 4.8 1.1
LysM 1/13 23 66 .. 1 44 [] 42.8 5.2e-11
LysM 2/13 78 121 .. 1 44 [] 26.0 4.9e-06
LysM 3/13 143 186 .. 1 44 [] 51.5 1.4e-13
LysM 4/13 208 251 .. 1 44 [] 46.8 3.5e-12
TOBE 1/1 241 259 .. 47 65 .] 6.1 3.8
LysM 5/13 271 314 .. 1 44 [] 54.4 1.9e-14
LysM 6/13 335 378 .. 1 44 [] 53.8 2.8e-14
LysM 7/13 402 445 .. 1 44 [] 39.4 5.2e-10
LysM 8/13 467 510 .. 1 44 [] 46.4 4.6e-12
KOW 1/2 501 513 .. 1 13 [. 2.4 96
LysM 9/13 548 591 .. 1 44 [] 49.1 6.9e-13
KOW 2/2 582 594 .. 1 13 [. 5.9 11
LysM 10/13 636 679 .. 1 44 [] 53.6 3.4e-14
LysM 11/13 711 751 .. 1 44 [] 24.0 2e-05
LysM 12/13 760 803 .. 1 44 [] 27.3 2.1e-06
LysM 13/13 890 912 .. 14 36 .. 4.6 11
Trypan_glycop 1/1 920 932 .. 420 433 .] 3.3 4.4
ARID 1/1 1586 1608 .. 1 23 [. 7.9 0.69
NAD_binding_1 1/1 1636 1689 .. 55 118 .. 7.3 0.75
Glyco_hydro_18 1/1 1493 1843 .. 1 392 [] 458.4 5.9e-134
Alignments of top-scoring domains:
Fz: domain 1 of 1, from 52 to 65: score 4.8, E = 1.1
*->LdCsklPvpeddeelCm<-*
++C+klP ++ lC
F07G11.9 52 MKCDKLPLGDK---LCL 65
LysM: domain 1 of 13, from 23 to 66: score 42.8, E = 5.2e-11
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
+k+GD+++ IA+ ++sv++L++lN+g++++++ G++L++
F07G11.9 23 TEIKSGDSCWNIASNAKISVERLQQLNKGMKCDKLPLGDKLCLA 66
LysM: domain 2 of 13, from 78 to 121: score 26.0, E = 4.9e-06
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
+ k DT+++I+++ ++s+ +++ +N+g+++++++vG + ++
F07G11.9 78 LKLKAEDTCFKIWSSQKLSERQFLGMNEGMDCDKLKVGKEVCVA 121
LysM: domain 3 of 13, from 143 to 186: score 51.5, E = 1.4e-13
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
++++kGDT+++I+ +++s++++++lN+gL+++++++G + +i+
F07G11.9 143 HKIQKGDTCFKIWTTNKISEKQFRNLNKGLDCDKLEIGKEVCIS 186
LysM: domain 4 of 13, from 208 to 251: score 46.8, E = 3.5e-12
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
++k+GDT++ I+ + ++s+qe++elN+gL+++++++G + +++
F07G11.9 208 LKIKEGDTCYNIWTSQKISEQEFMELNKGLDCDKLEIGKEVCVT 251
TOBE: domain 1 of 1, from 241 to 259: score 6.1, E = 3.8
*->gLapGeeVtlgidpekvhl<-*
+L++G+eV ++++p+++ +
F07G11.9 241 KLEIGKEVCVTVNPTSIAF 259
LysM: domain 5 of 13, from 271 to 314: score 54.4, E = 1.9e-14
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
Y+ kkGDT+++I+ ++++s++++++lN+g++++++ +G +L++
F07G11.9 271 YRFKKGDTCYKIWTSHKMSEKQFRALNRGIDCDRLVPGKELCVG 314
LysM: domain 6 of 13, from 335 to 378: score 53.8, E = 2.8e-14
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
+tVk+GDT++sI+ + +++ q+++++Np+L+++++++G + +++
F07G11.9 335 ITVKPGDTCFSIWTSQKMTQQQFMDINPELDCDKLEIGKEVCVT 378
LysM: domain 7 of 13, from 402 to 445: score 39.4, E = 5.2e-10
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
+++ +GDT++ I+ + ++ q++++lN++L++++++vG + ++
F07G11.9 402 VKINPGDTCFNIWTSQRMTQQQFMDLNKRLDCDKLEVGKEVCVA 445
LysM: domain 8 of 13, from 467 to 510: score 46.4, E = 4.6e-12
*->YtVkkGDTLssIArkygvsvqeLaelNpgLsspniyvGQvLkiP<-*
+ + +GDT+++I+++ ++++q+++elN+gL++++++vG + +i
F07G11.9 467 VQINPGDTCFKIWSAQKLTEQQFMELNKGLDCDRLEVGKEVCIA 510
[output cut off at A = 10 top alignments]