Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F07A5.1a
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Query: F07A5.1a CE05554 locus:inx-14 UNC-7 like status:Partially_confirmed SW:O62136
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Innexin Innexin 688.7 2.8e-203 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Innexin 1/1 21 400 .. 1 412 [] 688.7 2.8e-203
Alignments of top-scoring domains:
Innexin: domain 1 of 1, from 21 to 400: score 688.7, E = 2.8e-203
*->dDavDrLnYlyTttLLvffslLisaKQYVGsPIqCwvPaqFtDLgsW
++++++ +l+T++LL+ff+lL++aKQ++G+PI+C++P+q++DL+sW
F07A5.1a 21 LYEFYDRLHLFTVYLLGFFVLLTGAKQHFGNPIDCMLPKQHDDLKSW 67
eqYaEnYCwiqnTYFvPfaferqqevpvitvpdrknrqsldpkdkkqigY
++Y++n+C +++T++++ ++++++ +++++++++s ++Y
F07A5.1a 68 RDYIHNFCLFYGTFRYD-----VSNGTS-EFGSYTEDAS--------VNY 103
YQWVPFvLalqAalFYlPsilWrllskesGikiqelvdmaedirnikeee
YQWVPF++a+q+++F+lP+++W++++k ++i+++++vd++++i+++k++e
F07A5.1a 104 YQWVPFFFAFQVCCFLLPFWCWAYMQKLIYIDMAFIVDYSGKINSEKTFE 153
kkkkikalarhLrGrylrdklrlrkkkirphkilkfsniqysagrgrgCG
k+k++++++++ y++d++++r r+hk++++s+i+++++++
F07A5.1a 154 KTKEKVDRIVN----YMHDHFKFR----RAHKMGYLSWITFNSAFP---- 191
sfvtalYlvtKlLYlaNVilQfyLlNkFLgterslwwGfdvlkdllnGtp
++lY++tKl++++NVi+Q++L++kFL+++ s++wGfd+l++++++tp
F07A5.1a 192 ---SVLYSLTKLFFITNVIIQVNLVCKFLDVD-SWTWGFDLLGKFIHPTP 237
RAPEFS.F.DKQRFAailteWeesPmvGvFPRVTlCDFeVRvlgGNvqrH
RAPEFS+F+DKQRFAailt+++++ ++++FP++++C+++++++++N+++H
F07A5.1a 238 RAPEFSsFsDKQRFAAILTDGSYN-RFQYFPILVGCEYQLQESVSNFVNH 286
tvQCVLmINmFNEKIFvFLWFWfllLlvlTvislfywiliifspsfnenF
++QC++++N++NEKIF++L+FW+l+L++l+vi++++wil+i+s+++ne++
F07A5.1a 287 KAQCIIPMNVINEKIFIGLYFWLLVLTALSVIGTVKWILRIKSKKLNEVM 336
IrsyLemidereddekkkeneselvrrFvskyLkpDGvFLLrmisdhaGd
I+++++++ ere+ +++n+++++++Fv+kyL++DG++L+++++d++G+
F07A5.1a 337 IYKLIKKSLEREP---FDSNIHDHRYNFVHKYLCADGILLIYFMMDTNGF 383
lfttElvgeLwkkylen<-*
l+t+E++g+L+kky+++
F07A5.1a 384 LKTEEVIGALFKKYCSD 400