Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F07A11.4
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Query: F07A11.4 CE03146 ubiquitin carboxyl-terminal hydrolase status:Partially_confirmed TR:Q19132 protein_id:CAA91317.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UCH Ubiquitin carboxyl-terminal hydrolase 487.8 1.4e-169 2
zf-MYND MYND finger 64.4 5e-20 1
PHD PHD-finger 6.5 0.66 1
TIR TIR domain 2.6 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UCH 1/2 14 404 .. 45 58 .. -24.2 5.9e+04
TIR 1/1 507 534 .. 1 35 [. 2.6 9.7
zf-MYND 1/1 716 756 .. 1 43 [] 64.4 5e-20
PHD 1/1 925 937 .. 39 51 .] 6.5 0.66
UCH 2/2 420 1067 .. 1 456 [] 501.8 2e-174
Alignments of top-scoring domains:
UCH: domain 1 of 2, from 14 to 404: score -24.2, E = 5.9e+04
*->snplgs.........................................
s++++s ++++ +++ +++ ++ + ++++ +++ +++ +++++++++
F07A11.4 14 SSSCSSirssnysrsytpsfntfkyspssytpnisrnlnttstgstt 60
..................................................
+++++ ++++ ++++ + +++++++++ ++++ +++++ +++ + +
F07A11.4 61 sdtpklssssaprsrlsfttpsststnlprtsitshktlysspaaarvsv 110
..................................................
+++++ ++++++++ ++ ++ ++ ++++ ++++ ++ +++ +++ +++
F07A11.4 111 stndslshstphntyrgiskystierstvadtkpyyssatsslsstydsr 160
..................................................
+++++++ ++++ ++ + +++++++++ ++++++ +++++ +++++ +
F07A11.4 161 rhsrsdrissstlpdvkietgpttrthmvhptsshirsrssygrsntvsm 210
..................................................
++ +++ ++++++++ ++ +++++++++ + ++ ++++++++ +++
F07A11.4 211 faqqareradreekdrdykewmqkekdretelgletlypttsssssaqss 260
..................................................
+++ +++ +++++++++++ ++++ ++ ++++++++ + ++ +++
F07A11.4 261 aqsefrrsvapsptststttpyrsnryssatrggnsssaaplddimstsy 310
..................................................
++ ++++ ++ ++++++ ++++++ +++++++++++ ++++++ +
F07A11.4 311 ssvaatpppaysqlstststllrtrrerlereeegrnsssmtpqpqslvp 360
....................................kgqllcal<-*
+++++++++++ ++++++ +++ + ++ +++++++++a+
F07A11.4 361 ppppppppppsaasngrsgylprsvsaavissasssSVYKPTAM 404
TIR: domain 1 of 1, from 507 to 534: score 2.6, E = 9.7
*->vFisfsgksrsnddrdtFvshllkeLeekkqpgin<-*
F +f+ +d ++F+s ll L+e+ ++++
F07A11.4 507 -FANFAQ-----HDAHEFLSFLLDGLHED-VNRVK 534
zf-MYND: domain 1 of 1, from 716 to 756: score 64.4, E = 5e-20
*->CanCgkeatksrqLkkCsrCknarYCSkeCQrkdWll.gHkreC<-*
C++Cg++++k Lk C++C++a YCSkeCQ+++W+++gH++eC
F07A11.4 716 CHECGNSKLK---LKACEECYDAVYCSKECQVANWSTgGHREEC 756
PHD: domain 1 of 1, from 925 to 937: score 6.5, E = 0.66
*->pegkWlCpeCtpk<-*
pe+ W+C C++
F07A11.4 925 PEESWYCSTCKEN 937
UCH: domain 2 of 2, from 420 to 1067: score 501.8, E = 2e-174
*->egpvGLvNlGNTCYmNSvLQcLfhipelrdyllsnrhylprinnsnp
+g++GL+N+GNTC+mN+vLQ+L+++ elr+y+l+n hy+p+in++np
F07A11.4 420 QGYTGLRNIGNTCFMNAVLQMLVNNIELREYFLRN-HYQPEINETNP 465
lgskgqllcaladlfkslqsnqyssppseaelslfeSnavsalnknskpe
lgs+g+l++a+ad++++++s+++
F07A11.4 466 LGSEGRLAKAFADFMHQMWSGHQ--------------------------- 488
esisPtqflktlgkinpsFselegykliqQqDAqEfllfLLdgLhEDlNr
++i+Ptq++++++ +++F+ ++ Q+DA+Efl fLLdgLhED+Nr
F07A11.4 489 KAIEPTQIKNIVAEKASQFA---NFA---QHDAHEFLSFLLDGLHEDVNR 532
vakkpyneehepgldlalee.ee.adelkdseaseeawknkstrneslis
v+kkp+ +++++++++d +s+eawkn+++rn+s+++
F07A11.4 533 VKKKPL-------------TgTVeSHGRHDLDVSNEAWKNHILRNDSIFV 569
dlFqGqlesrikCaleCgkvsvtyepFldLslpi................
dlF+Gql+s+++C ++C++vs+t++pF +L++p ++++++++ + ++
F07A11.4 570 DLFHGQLKSHVQC-PNCDRVSITFDPFVYLPVPFpknkqstdlifwplen 618
..................................................
++++ + + + +++++ + + +++ + ++++ + + ++ ++ +
F07A11.4 619 qtkpykltvsystegtvadflsvvsetvrvptrnlraceaichkfdkiys 668
..................................................
+ + ++ ++++ +++++ + +++ + +++ ++++++ ++
F07A11.4 669 ldmkvsdivspdrlfvfqthdemefneeivilhvlqrelyrkntkhache 718
..................................................
++++ + + ++ + +++ + + ++++++++ ++++++++ +++
F07A11.4 719 cgnsklklkaceecydavycskecqvanwstgghreecskrkpsetvghp 768
..................................................
+ ++++ + ++ + + +++++++++++++++ ++++++++ ++
F07A11.4 769 livslprsqltyqhlyrvleaksrhtppgessssssvsstprrrsvaaep 818
..................................................
++++++ + ++ ++++++ ++++ ++++ ++ ++++ + + +++++
F07A11.4 819 rtknqkmfeirklsgqndsfgshsisddeacqslesggyvsvnwinqrng 868
..............................kpkeasdspksLeecLkaFt
++ + +++++ + + +++++ ++++ ++ ++++s+ ++ L+++L++F+
F07A11.4 869 kpyitienrkdidvdveksrqmnsrnmngyVKSNNSETNPHLTQMLDLFS 918
keEiLKviegenkyyCdkcgkkqeasKklkisrLPpiLtihLkRFsydge
++E L ++e+ +yC++c++ +ea+Kkl+++rLPp+L+i+LkRF y +
F07A11.4 919 ETERL---KPEESWYCSTCKENVEATKKLQLYRLPPVLIIQLKRFVYTAF 965
tssnim....KindrvefPleeLDlspylnqktnkeraaaeansleeeqq
t++ +m +++K ++ve+Ple+LD+sp+l+
F07A11.4 966 TYQSSMarrsKDTRSVEYPLESLDMSPFLA-------------------- 995
svnadegnnqeeseestksqeegenpptkYeLvaVvvHsGsslsgGHYia
+ + ++t+Y+L++Vv+HsG +++ GHYi+
F07A11.4 996 -------------------ETSPHPNSTMYDLTGVVCHSG-NSYFGHYIS 1025
yikk......ldnnkWykFDDsvetVgdwkvvsvvseeevlkesgggtat
+ + + ++++ + +W+ FDDs tV ++s+++ ++e+
F07A11.4 1026 MGRLadfdssKTKIEWRNFDDS--TV------ARQSTSTLQTED------ 1061
seskrlkryrwAYiLFY<-*
AY+LFY
F07A11.4 1062 -----------AYLLFY 1067