Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F02A9.6
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Query:  F02A9.6  CE00237  locus:glp-1 GLP-1 protein status:Partially_confirmed SW:P13508 protein_id:CAA79620.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
notch           Notch (DSL) domain                      224.2    1.9e-63   3
EGF             EGF-like domain                         170.0    3.8e-47  13
ank             Ankyrin repeat                          109.3    2.4e-29   6
HlyC            RTX toxin acyltransferase family          3.7          4   1
DUF660          Family of unknown function (DUF660)       3.5        7.6   1
Alpha_adaptin_C Alpha adaptin AP2, C-terminal domain      2.9        3.7   1
MGAT2           N-acetylglucosaminyltransferase II (M    -0.8        9.9   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
EGF               1/13     23    57 ..     1    45 []    21.1  0.00029
EGF               2/13    101   110 ..    31    45 .]     2.6       50
EGF               3/13    121   151 ..     1    45 []    22.2  0.00014
EGF               4/13    158   189 ..     1    45 []    28.8  1.9e-06
EGF               5/13    194   229 ..     1    45 []    22.6  0.00011
EGF               6/13    236   268 ..     1    45 []    31.4  3.5e-07
EGF               7/13    275   307 ..     1    45 []    19.0   0.0012
EGF               8/13    310   320 ..    30    45 .]     6.6      3.7
EGF               9/13    329   358 ..     1    45 []    21.5  0.00023
EGF              10/13    373   405 ..     1    45 []    35.3  2.8e-08
EGF              11/13    411   442 ..     1    45 []    22.2  0.00014
MGAT2             1/1     444   450 ..   518   524 .]    -0.8      9.9
EGF              12/13    450   478 ..     1    45 []    27.8  3.9e-06
Alpha_adaptin_C   1/1     487   497 ..    98   108 ..     2.9      3.7
notch             1/3     489   527 ..     1    42 []    79.3  7.7e-20
EGF              13/13    542   559 ..     1    17 [.    -1.0  5.2e+02
notch             2/3     531   568 ..     1    42 []    78.4  1.5e-19
notch             3/3     569   608 ..     1    42 []    81.5  1.8e-20
ank               1/6     949   960 ..    22    33 .]     7.2      3.1
ank               2/6     961   993 ..     1    33 []    22.2  0.00016
ank               3/6     994  1015 ..     1    22 [.     4.8       14
ank               4/6    1030  1065 ..     1    33 []    21.6  0.00023
ank               5/6    1074  1106 ..     1    33 []    32.4  1.9e-07
ank               6/6    1107  1139 ..     1    33 []    25.6  1.7e-05
HlyC              1/1    1152  1161 ..   152   161 .]     3.7        4
DUF660            1/1    1184  1198 ..   212   226 .]     3.5      7.6

Alignments of top-scoring domains:
EGF: domain 1 of 13, from 23 to 57: score 21.1, E = 0.00029
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      C  +  Cs +G+C n+        ++y C+C+ G     + G +C
     F02A9.6    23    CGREGACSVNGKCYNGKL-----IETYWCRCKKG-----FGGAFC   57

                   *

     F02A9.6     -   -

EGF: domain 2 of 13, from 101 to 110: score 2.6, E = 50
                   *->CppGdyylsytGkrC<-*
                      C +G     y G++C
     F02A9.6   101    CEEG-----YGGPDC    110

EGF: domain 3 of 13, from 121 to 151: score 22.2, E = 0.00014
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      C+++ pC+n G C +  g       g++C+C +G     y G +C
     F02A9.6   121    CDSD-PCNN-GLCYPFYG-------GFQCICNNG-----YGGSYC   151

                   *

     F02A9.6     -   -

EGF: domain 4 of 13, from 158 to 189: score 28.8, E = 1.9e-06
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      Ca+n  C +g tCvn+          y+C+Cp G      +G++C
     F02A9.6   158    CAQN-ECAEGSTCVNSVY-------NYYCDCPIG-----KSGRYC   189

                   *

     F02A9.6     -   -

EGF: domain 5 of 13, from 194 to 229: score 22.6, E = 0.00011
                   *->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
                      Ca+  + C++ G+C++ ++     +  ++C+C  G     y G++C
     F02A9.6   194    CALMGnICNH-GRCIPNRD----EDKNFRCVCDSG-----YEGEFC  229

                   -*

     F02A9.6     -    -

EGF: domain 6 of 13, from 236 to 268: score 31.4, E = 3.5e-07
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      C  +  C n+ tC n++g       ++tC+C+pG     y+Gk+C
     F02A9.6   236    CLIEETCVNNSTCFNLHG-------DFTCTCKPG-----YAGKYC   268

                   *

     F02A9.6     -   -

EGF: domain 7 of 13, from 275 to 307: score 19.0, E = 0.0012
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      C +  +C+n+G C    +      +++ C C +G     +tG rC
     F02A9.6   275    CKDY-VCQNDGYCAHDSN------QMPICYCEQG-----FTGQRC   307

                   *

     F02A9.6     -   -

EGF: domain 8 of 13, from 310 to 320: score 6.6, E = 3.7
                   *->eCppGdyylsytGkrC<-*
                      eCp G     + G++C
     F02A9.6   310    ECPSG-----FGGIHC    320

EGF: domain 9 of 13, from 329 to 358: score 21.5, E = 0.00023
                   *->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
                      C+  n+ C n+G+C+n+           +C+C p      y+G+rC
     F02A9.6   329    CSRSNgTCYNDGRCING-----------FCVCEPD-----YIGDRC  358

                   -*

     F02A9.6     -    -

EGF: domain 10 of 13, from 373 to 405: score 35.3, E = 2.8e-08
                   *->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
                      C  n pC n++tC+++ +      +gy+C+Cp G     + G +C
     F02A9.6   373    CKYN-PCVNNATCIDLKN------SGYSCHCPLG-----FYGLNC   405

                   *

     F02A9.6     -   -

	[output cut off at A = 10 top alignments]


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