hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/F01G4.2
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Query:  F01G4.2  CE03127  locus:ard-1 short-chain alcohol dehydrogenase status:Confirmed TR:Q19102 protein_id:CAA92764.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
adh_short    short chain dehydrogenase                  188.6      1e-52   1
Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogen     7.0       0.87   1
TSA          Type specific antigen                        0.6        8.9   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ald_Xan_dh_C   1/1      63    84 ..    97   120 .]     7.0     0.87
TSA            1/1      71    95 ..   519   542 .]     0.6      8.9
adh_short      1/1       8   254 ..     1   271 []   188.6    1e-52

Alignments of top-scoring domains:
Ald_Xan_dh_C: domain 1 of 1, from 63 to 84: score 7.0, E = 0.87
                   *->ddeetArdAAeLVkVeYeeLpppa<-*
                      ++ee  r+A  +V+ eY +L+  a
     F01G4.2    63    TSEEEVRAAFAKVQAEYGRLD--A    84

TSA: domain 1 of 1, from 71 to 95: score 0.6, E = 8.9
                   *->sFsKiEeKY.svnaliAsagvRYnF<-*
                      +F+K+   Y+ + al+  ag+ Y F
     F01G4.2    71    AFAKVQAEYgRLDALVNCAGIAYAF    95

adh_short: domain 1 of 1, from 8 to 254: score 188.6, E = 1e-52
                   *->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekaeqvaaelk
                      +g vaLvTG++sG+G+ +A+ Lak+Ga+V+++d+ ++k+    a ++
     F01G4.2     8    KGLVALVTGGASGLGKGAAEVLAKAGAQVAILDLPQSKG----ADVA 50

                   aelGdralfiqlDvtdeeqvkaavaqaverlGdrlDvLVNNAGilgdgpp
                   +e G   +f ++ vt+ee+v+aa+a++++++G rlD+LVN+AGi+   ++
     F01G4.2    51 KEIG--GIFTPASVTSEEEVRAAFAKVQAEYG-RLDALVNCAGIAYAFKL 97

                   fe.....elseedwervidvNltGvflltravlpamdhmlk......rkg
                      +++++ + e ++++idvN+ G+f++ r+       m +++++ ++++
     F01G4.2    98 YSvqkkkHVDFEKIRQTIDVNVLGTFNVIRHGVA---LMGEhekdanGQR 144

                   GrIvNisSvaGlrvgvpglsaYsASKaavigltrsLAlElaphgtgIrVn
                   G+++N++Sva+++ g  g+saYsASK+a++g+t  LA+++a +g  Ir n
     F01G4.2   145 GVVINTASVAAFD-GQTGQSAYSASKGAIVGMTLPLARDFAGDG--IRFN 191

                   avaPGgvdTdmtkalrsrlieakkkvrevadiadpeleeritstitplgr
                    +aPG +dT+++ +l                   + +   ++++i p
     F01G4.2   192 TIAPGLMDTPLLSSLP------------------EKVKSFLAQLI-PNPS 222

                   ygvtpeeianavlfLasdgasysvtgqtlnvdggi<-*
                    ++ p e+ ++v +++  +  y  +g+t+ +dg++
     F01G4.2   223 RLGHPHEYGALVQHII--ENQY-LNGETIRFDGAL    254

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