Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01D5.9
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Query: F01D5.9 CE18566 Cytochrome P450 status:Partially_confirmed TR:Q9XVA6 protein_id:CAB04044.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
p450 Cytochrome P450 296.6 3.5e-92 1
CIDE-N CIDE-N domain 4.9 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CIDE-N 1/1 141 151 .. 70 80 .] 4.9 6.9
p450 1/1 135 519 .. 81 494 .] 296.6 3.5e-92
Alignments of top-scoring domains:
CIDE-N: domain 1 of 1, from 141 to 151: score 4.9, E = 6.9
*->vvLekGqkWap<-*
++L++G+kW +
F01D5.9 141 LLLASGEKWRG 151
p450: domain 1 of 1, from 135 to 519: score 296.6, E = 3.5e-92
*->pfrgkgilfsdgGprWkalRrlltptfrsfgmgklkslepriqeead
p++g g+l+++g ++W+ +R+++tp f+++ l + +++ ++
F01D5.9 135 PWLGTGLLLASG-EKWRGRRKMMTPSFHFN---VLIDFQVVFNSQSM 177
dlverlrktagepgsg.rviditellsravlnvIcsilFgvrfdsledee
+l+e+++ a + ++++id ++++ r++l++Ic +++g ++ ++++
F01D5.9 178 ILLEQIENAAKKT--DdSTIDAFPYIKRCALDIICETAMGTTVS-AQTNH 224
alplvklvqelll.lvsspdhqlldlfplllylpgphlrkfkearkelkd
p+v +v+e+++ +++ + ++l ++p+++ + + +f++ +++
F01D5.9 225 THPYVVAVNEMNSlAFKYQRMPWLWIKPIRQ--LIGYEADFQRNLDIVTS 272
yldklieerretldddgee.e.ekkksprdfldalllaknaemeeekdge
+++k+i ++ ++ d++ + e+ ++++ fld l+++k ++g+
F01D5.9 273 FTKKVIDRKLREHDETDGMvVvEEESKKKAFLDMLIEKK-------EEGG 315
reselsdeelaatvldllfAGteTTsstlswaLylLakhPevqaklreEi
l e+++ +v++++f+G++TTs ++ w+L La Pe q+k++eE+
F01D5.9 316 ----LGYEDIREEVDTFMFEGHDTTSAGIGWSLWCLANCPEYQKKCHEEL 361
devi.gdhrkeisptydDlqnmPyldavIkEtLRlypvvpnlllpRvatk
de+++g +r + + +Dl++m yl+ ++kE+LR++p vp + R + +
F01D5.9 362 DEIFeGTSR---ECSVEDLKKMKYLEKCVKEALRMRPSVP--QMARSVEE 406
DteigGylIPKGtlVivnlyslhrDpkvfpnPeeFdPeRFldengtaivn
+ei+G +PKG+ V++++ + +p fpn e+FdPeRF++++
F01D5.9 407 EVEIDGKILPKGCSVMISPAFIQNNPRTFPNHEVFDPERFNEDEI----- 451
fkrksfaflPFGaGpRnClGerlArmElflfLatlLqrFeleplpgvdpp
+kr+ +a++PF+aGpRnC+G+ +A+ E + +++++L+rF +++ g +
F01D5.9 452 SKRHAYAYIPFSAGPRNCIGQKFAMQEEKTVISWVLRRFHIHTDIGLLEN 501
pidetpiisglvlppkpyklkf<-*
++++ +++p +++ lkf
F01D5.9 502 MPLPET----ITRPSLGFPLKF 519