Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/F01D5.1
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Query: F01D5.1 CE18559 status:Partially_confirmed TR:Q9XVB1 protein_id:CAB04039.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 113.2 1.7e-32 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ShTK 1/3 21 58 .. 1 44 [] 38.2 5.8e-10
ShTK 2/3 68 105 .. 1 44 [] 47.5 9.3e-13
ShTK 3/3 117 156 .. 1 44 [] 41.0 8.7e-11
Alignments of top-scoring domains:
ShTK: domain 1 of 3, from 21 to 58: score 38.2, E = 5.8e-10
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C D Dp++ C ++++ C + + +++++ke Cp TC++C+
F01D5.1 21 PCID--DPNVKCEDFKDD---CATEK-MIPLLKESCPVTCKLCP 58
ShTK: domain 2 of 3, from 68 to 105: score 47.5, E = 9.3e-13
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+D D+++dCa+++++ C+n++ y++++k++Cp TC++C+
F01D5.1 68 PCFD--DKDTDCASFKQF---CSNSK-YIPMLKSFCPVTCNMCP 105
ShTK: domain 3 of 3, from 117 to 156: score 41.0, E = 8.7e-11
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C+ D ++Ca w+++G+ Cn+++Y ++ + ++C+k+CGfC+
F01D5.1 117 NCQ---DNGPNCAGWVKNGY-CNKCFYKCSEREKYCAKSCGFCT 156