Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/E03H4.10
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Query: E03H4.10 CE20647 C-type lectin domain status:Partially_confirmed TR:O17741 protein_id:CAB04034.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
CUB CUB domain 90.8 1.8e-25 1
lectin_c Lectin C-type domain 66.7 4.8e-16 2
Cdc37 Cdc37 family 2.2 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cdc37 1/1 146 153 .. 314 321 .] 2.2 8.3
lectin_c 1/2 41 153 .. 1 125 [] 22.4 0.00022
lectin_c 2/2 175 281 .. 1 125 [] 47.4 6.9e-11
CUB 1/1 305 409 .. 1 116 [] 90.8 1.8e-25
Alignments of top-scoring domains:
Cdc37: domain 1 of 1, from 146 to 153: score 2.2, E = 8.3
*->lmqYileL<-*
lm+Yi+eL
E03H4.10 146 LMSYICEL 153
lectin_c: domain 1 of 2, from 41 to 153: score 22.4, E = 0.00022
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.snt
++ + + Ae C + g++ Lv++ + ++ ++ ++s
E03H4.10 41 TKVNHTSAESSCNSFGAT--LVTVKNVNDE----QAIATVVAAsSAR 81
yaWIGLtdinte..gtwvwegwetdgspvnytenWapgePnnrgnhGgnE
+W+GL ++ +++ ++ w + +gs +y+ n + + P +
E03H4.10 82 LIWLGL-YCFDSdpAKCLWDD--NSGSAQSYD-NFSIDFPLVDAG----- 122
dCveiytdtdflaGkWnDepCdskl.pyvCef<-*
+Cv ++t + laGkW +e+C+skl y+Ce
E03H4.10 123 HCVYLSTL-GALAGKWISEDCESKLmSYICEL 153
lectin_c: domain 2 of 2, from 175 to 281: score 47.4, E = 6.9e-11
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
++ ++ A++ C + +g+ LvsI+s+ E+ +++ ++ ++y
E03H4.10 175 TAEPFIIAQTKCAETYGD--LVSIHSSNEN----RYIETFAA--QDY 213
aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv
+ IG + +++ +w d+s ++y ++++ n +++ ++Cv
E03H4.10 214 YLIGAV-WKLDNSLYW----LDKSKWDYN---NTDPENSYRG----DYCV 251
eiytdtdfl..aGkWnDepCdsklpyvCef<-*
+++t +++ ++G W + +C + +y+C++
E03H4.10 252 AMSTVISSPipSGFWFSTNCTRPAKYICKR 281
CUB: domain 1 of 1, from 305 to 409: score 90.8, E = 1.8e-25
*->CGgtldltessGsisSPnYPnrsdYppnkeCvWrIrappgyrvVeLt
C l s+G+i+SPnYP+ +Y +n +C++++++ y+ + L+
E03H4.10 305 CNAG--LLMSPGVITSPNYPE--NYFNNENCTYQLSTLGAYK-IALR 346
FqdFdlEdhdgaCryDyvEirDGdpssspllGrfCGsgkPedirStsnrm
F +F +E + D+v ++DG+ +sp l r G + P ++S++n+m
E03H4.10 347 FASFSTE------ANDVVTVYDGLTTDSPCLRRCSGTQRPFALTSSGNTM 390
likFvsDasvskrGFkAty<-*
l++F+sD+ ++GF+A++
E03H4.10 391 LVTFTSDSKGISSGFYARF 409