Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/E03G2.2
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Query:  E03G2.2  CE03119  locus:mrp-3 multidrug resistance-associated protein status:Partially_confirmed TR:Q19048 protein_id:CAA92148.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
ABC_tran       ABC transporter                          214.0      8e-61   2
ABC_membrane   ABC transporter transmembrane region     181.1    1.8e-50   2
DUF446         Domain of unknown function, DUF445         7.9       0.35   1
FBPase_glpX    Bacterial fructose-1,6-bisphosphatase,     5.5       0.75   1
Sua5_yciO_yrdC yrdC domain                                5.2        3.1   1
Coq4           Coenzyme Q (ubiquinone) biosynthesis p     4.3        3.1   1
PRK            Phosphoribulokinase / Uridine kinase f     3.2        6.6   1
Sec15          Exocyst complex subunit Sec15-like         2.8        9.6   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
ABC_membrane     1/2     236   507 ..     1   285 []    93.6  3.9e-24
DUF446           1/1     597   610 ..    91   104 .]     7.9     0.35
Sec15            1/1     646   658 ..     1    13 [.     2.8      9.6
ABC_tran         1/2     581   754 ..     1   199 []    76.3  6.1e-21
Sua5_yciO_yrdC   1/1     740   755 ..     1    16 [.     5.2      3.1
ABC_membrane     2/2     835  1113 ..     1   285 []    95.4  1.1e-24
PRK              1/1    1188  1205 ..     1    19 [.     3.2      6.6
FBPase_glpX      1/1    1198  1212 ..     1    15 [.     5.5     0.75
Coq4             1/1    1228  1239 ..   209   220 .]     4.3      3.1
ABC_tran         2/2    1185  1368 ..     1   199 []   140.0  2.3e-39

Alignments of top-scoring domains:
ABC_membrane: domain 1 of 2, from 236 to 507: score 93.6, E = 3.9e-24
                   *->lliailllilagatalvtfplllgrlldsgfplsdgnddharsslis
                      +l + + ++l++++ ++  p +l++l+ +   +   n +    ++i
     E03G2.2   236    ILGGSFIKFLSDLLQFA-NPTFLNYLILF---IETPNAP--LINGIG 276

                   lailslfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilglfd
                   la++ lf+++ + +l+ +++f+   + r+g ++ ++l  a++++ l l+
     E03G2.2   277 LAVG-LFLAGQIKSLFMNTYFIA--MTRVGAKIQTMLSCAVYEKSLLLSN 323

                   sffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmfyy
                    ++ +++vGe ++ l+ Dv++ r  +++    ++ ++++++++++++ ++
     E03G2.2   324 TARRERTVGEMVNILSIDVDRFRMITPQIQQYWSSPFQIIICMVLLSQTI 373

                   swkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEslsg
                   ++  + +++ ++  +++++  +++++++ + + +k  +++ ++++E+l+g
     E03G2.2   374 GVAVWAGIV-VMISIVPINICVSMITKRWQLRLMKYKDERIRLINEVLNG 422

                   irTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisylsy
                   i++Vk  ++E +++e ++  +++  k   + a++ ++ +  + ++  ++
     E03G2.2   423 IKVVKLSAWETAMEETIERVRDKELKMIKQSALLKTFADCLNVGAPVFVA 472

                   alalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
                   +  +++++       +++l++ + f++lsl+n+l+gpl
     E03G2.2   473 LSSFTVFVLI---DPKNVLTPNIAFVSLSLFNLLRGPL    507

DUF446: domain 1 of 1, from 597 to 610: score 7.9, E = 0.35
                   *->alLApLeelDkLiq<-*
                      +lLA+L+e++k+++
     E03G2.2   597    LLLAALGEMEKVCG    610

Sec15: domain 1 of 1, from 646 to 658: score 2.8, E = 9.6
                   *->eYekvilkCWmKE<-*
                      +Y+kvi++C +KE
     E03G2.2   646    LYKKVIESCALKE    658

ABC_tran: domain 1 of 2, from 581 to 754: score 76.3, E = 6.1e-21
                   *->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
                       e++ +vG+ G+GKS+LL + +G+ +   G + + G
     E03G2.2   581    KELVTVVGSVGSGKSSLLLAALGEMEKVCGYVGVRG-S--------- 617

                   erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
                            +++++Q+p ++   + ++  n+++ + l    ++  ++++
     E03G2.2   618 ---------VAYLSQQPWIL---NQSLKKNVLMQADL----NDVLYKKVI 651

                   kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
                   + + + e L++l+ g+d+ +++++ +LSGGqk R+a+ARa+++  ++++L
     E03G2.2   652 ESCALKEDLKQLPDGDDTEIGEKGINLSGGQKARIALARAVYQSKDVYFL 701

                   DEPTagLDpasraqllellrelrqq..ggTvllitHdldlldrlaDrilv
                   D P ++ D++  +++++ +   +   + +T +l+t    + ++ + +i+v
     E03G2.2   702 DDPLSAVDAHVGKHIFDNVIGPNGMlsHTTRILVTNCTSF-LQESGKIIV 750

                   ledG<-*
                   ++
     E03G2.2   751 MKGE    754

Sua5_yciO_yrdC: domain 1 of 1, from 740 to 755: score 5.2, E = 3.1
                   *->aallkgGeIVAypTdt<-*
                      + l+++G+I++++++t
     E03G2.2   740    SFLQESGKIIVMKGET    755

ABC_membrane: domain 2 of 2, from 835 to 1113: score 95.4, E = 1.1e-24
                   *->lliailllilagatalvtfplllgrlldsgfplsdgnddharsslis
                      ++ + l  ++a+++++  f+l  +++l     +sd+n+d   ++
     E03G2.2   835    IVTYVLPYAIAVVLNVS-FALGRSLWLTA---WSDANID--INHPDT 875

                   lails..lfavfvliglllqgsfyllagerlgqrlrkrlfrallrqilgl
                   ++++ + +++++++i+ +++ +f l+ + + g  ++k l++ ll+ +l+
     E03G2.2   876 MSVGArlGVYAGFGITEVIFLFFSLVLLLIGGVAASKNLHKPLLHNVLRN 925

                   fdsffdtnsvGeltsRltnDvekirdglgeklgllfqslatvvgglivmf
                   + s+fd ++ G++++Rl++D+e ++  l+ ++ +l+++l+++ ++++  +
     E03G2.2   926 PLSYFDITPIGRIINRLAKDMEVVDLRLSSSFRFLVMALINMTVLIV--S 973

                   yyswkLtLillailpllillsavlakklrklsrkeqkayakagsvaeEsl
                   y  + +  i+++++ +++++ ++  k +r+l+r  +  +++++s + E+l
     E03G2.2   974 YTTPLFIAIIIPVFIIYFFVLKYSIKSTRQLQRIASLTRSPIFSNFSETL 1023

                   sgirTVkafgrEeyelerfdkaledaekagikkaiiagllfgitqlisyl
                    gi TV+af + + +++r d+ l+++ k ++  + ++++l+++++l++++
     E03G2.2  1024 QGISTVRAFQWSDEFVRRNDEHLNTHVKCSYYSQMANRWLSIRLELLGNI 1073

                   syalalwfGgylvasvisgglsvgtlfaflslgnqligpl<-*
                   +++ a+ ++ +   s+i+ g+ ++++ ++l+++ +l++ +
     E03G2.2  1074 VIFSAAILAIIGKESGITAGMLGLSVSYSLNITFMLNMFV    1113

PRK: domain 1 of 1, from 1188 to 1205: score 3.2, E = 6.6
                   *->vIGvaGsSGaGKTtvarri<-*
                        Gv+G  GaGK++ a ++
     E03G2.2  1188    -VGVCGRTGAGKSSLALAL    1205

FBPase_glpX: domain 1 of 1, from 1198 to 1212: score 5.5, E = 0.75
                   *->drsLAmElvRVTEaA<-*
                       +sLA+ l+R +EaA
     E03G2.2  1198    KSSLALALFRIVEAA    1212

Coq4: domain 1 of 1, from 1228 to 1239: score 4.3, E = 3.1
                   *->leelRkeLgIta<-*
                      l++lR++L I++
     E03G2.2  1228    LHDLREKLTIIP    1239

ABC_tran: domain 2 of 2, from 1185 to 1368: score 140.0, E = 2.3e-39
                   *->GevlalvGpNGaGKSTLLklisGllppteGtilldGardlsdlsklk
                      G+++++ G++GaGKS+L+ ++ ++ + + G i++d     s+++
     E03G2.2  1185    GQKVGVCGRTGAGKSSLALALFRIVEAADGNISIDQ-TITSHIG--- 1227

                   erlerlrknigvvfQdptlfpnpeltvreniafglrlslglskdeqrdrl
                     l++lr+++  ++Q+ +lf    +t+r ni+  ++     +++ ++ +l
     E03G2.2  1228 --LHDLREKLTIIPQENVLF---ANTLRFNIDPKGQF----TDQQLWLAL 1268

                   kkagaeelLerlglgydhlldrrpgtLSGGqkQRvaiARaLltkpklLlL
                   +++++ + +e l+ + ++ + + + ++S Gq+Q +++ RaLl+k+k+L+L
     E03G2.2  1269 ENSNLKAHVELLPHKLESPVAEGGENFSVGQRQLLCLTRALLRKSKVLVL 1318

                   DEPTagLDpasraqllellrelrqqggTvllitHdldlldrlaDrilvle
                   DE+Tag+D  +   +++++re  +   T+++i H+l  ++++  ri+v++
     E03G2.2  1319 DEATAGIDNRTDTMVQATIREKFA-DSTIITIAHRLHTIIDYD-RIIVMD 1366

                   dG<-*
                   +G
     E03G2.2  1367 AG    1368

	[output cut off at A = 10 top alignments]


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