Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/DC2.3
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Query:  DC2.3  CE20632   galactoside-binding lectin status:Partially_confirmed TR:Q9UAW1 protein_id:AAD14724.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Gal-bind_lectin Galactoside-binding lectin               90.3    5.6e-25   1
Sybindin        Sybindin-like family                     76.9    2.5e-20   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Sybindin          1/1       3   106 ..     1   190 [.    76.9  2.5e-20
Gal-bind_lectin   1/1     153   300 ..     1   139 []    90.3  5.6e-25

Alignments of top-scoring domains:
Sybindin: domain 1 of 1, from 3 to 106: score 76.9, E = 2.5e-20
                   *->iysLYIiNkaGgLiyykewnrpkkegEKTFeYPlDllLeeddkkvvV
                      iy++YI+++ G ++yy ew r+k++g
       DC2.3     3    IYNVYIFDREGQCLYYDEWFRTKQSG--------------------- 28

                   vFgekDGIkvghvvvaVNGmtVnGtrlqdGkeVleyLdepdnYPVtvkFa

       DC2.3     - -------------------------------------------------- -

                   rpklttNEkllLagmlHSlhaIssklSPvdakegklgvpilpGsSGievL
                     + + +E++l++gm  S+++++ +l   d+               + ++
       DC2.3    29 --LAPIQEYKLVFGMMLSMKSFVDRLATNDSNQT------------VNYY 64

                   EtdtFkLhclqTlTGiKFvlvTdpgtginrdsLlrkyYELYsD<-*
                   +t+ +k+ +l++ T iK+ l+Tdp + ++++ Ll+k+Y  +++
       DC2.3    65 KTSAYKMTFLESATSIKIMLNTDPNA-TGIRDLLHKIYQTWTE    106

Gal-bind_lectin: domain 1 of 1, from 153 to 300: score 90.3, E = 5.6e-25
                   *->pglvalnlglkpGktltVkGtVapk...nakrFavNl.......gkg
                      p ++ + +gl +G+ + V G V+p+  ++ krF+++l  +   +g
       DC2.3   153    PFVSSIVGGLFAGRAIVVSGMVLPGfasDRKRFQIDLccgllidGDH 199

                   skEEndlvLHfNPRFneaH.......GDqntvVcNSkenGDNeWGtEqRe
                   +   ++ +LHfNPRF+ a ++  +++GD  +v+ NS+  G   WG+E+R
       DC2.3   200 M---DNKALHFNPRFD-AKtgwfsgpGDDKLVI-NSFVSG--RWGNEER- 241

                   aafPFqaGqpFeisIsveedkfkVkvndghefeFphRlkleavqyLgikG
                    ++PF+ G+pF i+I v e +fk+++ + h  +FphR ++e++  ++i G
       DC2.3   242 FDNPFKEGEPFQIRIMVFEKYFKISASGKHMCDFPHRVPVESIRTISING 291

                   Dikltsikf<-*
                    i++++++f
       DC2.3   292 NIRVDYVEF    300



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