Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2096.11
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Query: D2096.11 CE31461 status:Partially_confirmed TR:Q19011 protein_id:AAA81498.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GAS2 Growth-Arrest-Specific Protein 2 Domain 169.5 4e-49 1
CH Calponin homology (CH) domain 128.8 1e-34 3
CENP-B_N CENP-B N-terminal DNA-binding domain 8.1 0.98 1
ras Ras family 5.8 1.2 1
spectrin Spectrin repeat 4.5 8.9 3
Guanylin Guanylin precursor 2.2 2.8 1
V1R Vomeronasal organ pheromone receptor family, 2.2 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ras 1/1 40 77 .. 80 116 .. 5.8 1.2
CH 1/3 75 139 .. 50 106 .] 50.0 2e-12
spectrin 1/3 232 263 .. 77 108 .] 1.0 82
CH 2/3 260 325 .. 48 106 .] 30.1 6.6e-07
spectrin 2/3 410 449 .. 68 108 .] 1.6 55
CH 3/3 446 511 .. 48 106 .] 49.6 2.6e-12
Guanylin 1/1 537 552 .. 92 107 .. 2.2 2.8
spectrin 3/3 596 635 .. 68 108 .] 1.8 48
V1R 1/1 687 695 .. 257 265 .] 2.2 8
GAS2 1/1 650 722 .. 1 75 [] 169.5 4e-49
CENP-B_N 1/1 847 858 .. 1 12 [. 8.1 0.98
Alignments of top-scoring domains:
ras: domain 1 of 1, from 40 to 77: score 5.8, E = 1.2
*->DITsrdSFenvk.kWleeilrhad.kdenvpivLVGNKc<-*
++T++++ + +++kWl+ i++ ++++e +p++LVGNK+
D2096.11 40 SVTDESTVDGIQtKWLPLIHQPFGdYHE-TPVILVGNKV 77
CH: domain 1 of 3, from 75 to 139: score 50.0, E = 2e-12
*->nklr..............eNlnlaldaaekeGlgivlvlldpeDive
nk+ ++ ++ ++++ +++e+ln+a+ aa++e +g+ +lld+eD+
D2096.11 75 NKVGngfgeinsdsvsntERLNIAFAAADRE-FGV-ERLLDAEDVD- 118
aegnpdPDeklvltylwqLirrfq<-*
n+ PDek+++ty+++L+++ +
D2096.11 119 --TNN-PDEKSIITYVSSLYNALP 139
spectrin: domain 1 of 3, from 232 to 263: score 1.0, E = 82
*->dseeikerleeLnerWeaLlelaaeRrqkLee<-*
d++e+ + ++++++++ ++ el+ +++ + ++
D2096.11 232 DAKELDSLMKHVEDAYSDVFELISDKEGLIDR 263
CH: domain 2 of 3, from 260 to 325: score 30.1, E = 6.6e-07
*->Llnklr............eNlnlaldaaekeGlgivlvlldpeDive
L++++ ++ ++++ +++e lnla+ aa+ e +g +lld+eD+
D2096.11 260 LIDRFNasninsdsvpntESLNLAFAAADPE-FGA-GRLLDAEDVDT 304
aegnpdPDeklvltylwqLirrfq<-*
+n+ PDek v+ty+++L ++ q
D2096.11 305 --NNN-PDEKPVITYVSSLNNAPQ 325
spectrin: domain 2 of 3, from 410 to 449: score 1.6, E = 55
*->LieegeahpdseeikerleeLnerWeaLlelaaeRrqkLee<-*
++++g+ d++e+ + l+++++++ ++ el+ +++ + ++
D2096.11 410 MKTAGP-EADTKELDSLLKQVEDAYSDVFELISDKEGLIDR 449
CH: domain 3 of 3, from 446 to 511: score 49.6, E = 2.6e-12
*->Llnklr............eNlnlaldaaekeGlgivlvlldpeDive
L++++ ++ ++++ +++e+ln+al aa+ e +g +lld+eD+
D2096.11 446 LIDRCNasninsdsvsntERLNIALAAADAE-FGA-GRLLDAEDVDT 490
aegnpdPDeklvltylwqLirrfq<-*
+n+ PDek+++ty+++L ++f+
D2096.11 491 --NNN-PDEKSIITYVSSLNNAFP 511
Guanylin: domain 1 of 1, from 537 to 552: score 2.2, E = 2.8
*->eAasIlqaLrtIaqDd<-*
+A I++aL++I++D+
D2096.11 537 DADHIFKALEEISKDE 552
spectrin: domain 3 of 3, from 596 to 635: score 1.8, E = 48
*->LieegeahpdseeikerleeLnerWeaLlelaaeRrqkLee<-*
+++ g+ d++e+ + ++++++++ ++ el+ +++ + ++
D2096.11 596 MKTVGP-ESDAKELDSLMKHVEDAYSDVVELISDKEGLIDR 635
V1R: domain 1 of 1, from 687 to 695: score 2.2, E = 8
*->KrIikflrS<-*
Kr++++lrS
D2096.11 687 KRMVRILRS 695
GAS2: domain 1 of 1, from 650 to 722: score 169.5, E = 4e-49
*->dklddeVkrivedPPCkCpnkFqvekvSEGkYRfGDsqiLrlVRiLR
+k++ e+++++e+ C+C++++q+ek+SE+ YRfGD++i+r+VRiLR
D2096.11 650 EKITNEIELLKET--CSCCTPYQIEKISENYYRFGDTHIKRMVRILR 694
StVMVRVGGGWetLdefLlKhDPCRakg<-*
StVMVRVGGGWe L+e L+KhDPCR kg
D2096.11 695 STVMVRVGGGWEPLEESLQKHDPCRTKG 722
[output cut off at A = 10 top alignments]