Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2045.9
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Query: D2045.9 CE15743 status:Partially_confirmed TR:Q18989 protein_id:CAA84699.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_transf_25 Glycosyltransferase family 25 (LPS bi 145.7 8.3e-40 1
DUF701 Putative zinc binding domain (DUF701) 5.2 8.9 1
GNT-I GNT-I family 4.1 2.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF701 1/1 145 159 .. 50 64 .] 5.2 8.9
GNT-I 1/1 373 387 .. 210 225 .. 4.1 2.2
Glyco_transf_25 1/1 289 473 .. 1 221 [] 145.7 8.3e-40
Alignments of top-scoring domains:
DUF701: domain 1 of 1, from 145 to 159: score 5.2, E = 8.9
*->esfqtninpLsepiD<-*
e +++ ++pL++ iD
D2045.9 145 EKTHVAVSPLFQSID 159
GNT-I: domain 1 of 1, from 373 to 387: score 4.1, E = 2.2
*->ykhgnFssVIIvEDDL<-*
++h+ ++ VI+ EDDL
D2045.9 373 VQHN-YEKVIVFEDDL 387
Glyco_transf_25: domain 1 of 1, from 289 to 473: score 145.7, E = 8.3e-40
*->fmkiyvISLkrsidRRehIqkeFekLfekqnipFqFFDAidgkelnn
+kiy ++Lkr+++R++++qk F ++i++ A dg+ l++
D2045.9 289 VDKIYLVNLKRRQERLNRMQKIFDI----LGIEYSLLEATDGQKLDE 331
selkainyHLHPFiqikinknnaqdlnfkyrkkylgrpLTlGEiGCflSH
++ ++ny + ++y ++ ++rp+ +GEiGCflSH
D2045.9 332 LPEELKNY----------------QILEGYLDPISKRPMKNGEIGCFLSH 365
ysLWekcvelnleyiiILEDDvilsenFkefLedleklperfkeklrlly
y +W+++v+ n+e++i++EDD ++s++ + + + + +++++
D2045.9 366 YRVWQDVVQHNYEKVIVFEDDLRFSHDGLTRIREVL---QDLDA------ 406
indadllkletfyirrslrkdkkikayngrsffllksghaGTaGYlitpk
++ + ++++r+++ +++++ ++r++ + + ++++T+GY ++++
D2045.9 407 ---SHKPWDLIYLGRKKQSENEELWISQHRHL-SSVEYSYWTLGYMLSLN 452
aAkkLLkylknwpidrilpvDelm<-*
+A+kLL ++ p+ +++pvDe++
D2045.9 453 GARKLL---RPNPLKKMVPVDEYL 473