Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D2021.1
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Query: D2021.1 CE01878 glucose repression mediator protein status:Partially_confirmed TR:Q09519 protein_id:AAB36864.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
jmjC jmjC domain 164.5 1.1e-46 1
TPR TPR Domain 74.9 1.4e-19 5
CHORD CHORD 6.3 2.4 1
CBS CBS domain 6.0 6.8 1
HTH_10 HTH DNA binding domain 5.1 5.5 1
Papilloma_E5 Papillomavirus E5 5.0 4.9 1
DUF241 Arabidopsis protein of unknown function 1.6 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/5 105 124 .. 15 34 .] 5.1 13
TPR 2/5 129 154 .. 1 26 [. 11.5 0.19
TPR 3/5 166 193 .. 1 28 [. 9.3 0.81
HTH_10 1/1 283 295 .. 41 53 .] 5.1 5.5
TPR 4/5 344 377 .. 1 34 [] 27.7 4.3e-06
TPR 5/5 378 409 .. 1 32 [. 21.7 0.00023
DUF241 1/1 632 641 .. 1 10 [. 1.6 6.9
CBS 1/1 641 697 .. 9 54 .] 6.0 6.8
CHORD 1/1 903 915 .. 54 66 .] 6.3 2.4
jmjC 1/1 901 1009 .. 1 126 [] 164.5 1.1e-46
Papilloma_E5 1/1 1106 1126 .. 36 55 .. 5.0 4.9
Alignments of top-scoring domains:
TPR: domain 1 of 5, from 105 to 124: score 5.1, E = 13
*->gkydeAieayekALeldPnn<-*
+++ A+e y+++L++ P+
D2021.1 105 NDWTGALELYQEVLSHHPDL 124
TPR: domain 2 of 5, from 129 to 154: score 11.5, E = 0.19
*->aeayynlGnaylklgkydeAieayek<-*
+ y+ lG++yl+ ++++ Aiea+++
D2021.1 129 PSMYFGLGLVYLHFKQWKPAIEAFTR 154
TPR: domain 3 of 5, from 166 to 193: score 9.3, E = 0.81
*->aeayynlGnaylklgkydeAieayekAL<-*
+a +lG++y++l++y+ i ++ A+
D2021.1 166 LQAKVRLGVCYMELEDYNRCINLFKLAV 193
HTH_10: domain 1 of 1, from 283 to 295: score 5.1, E = 5.5
*->sehLRrAerKlie<-*
++hL++A+++li
D2021.1 283 LDHLKKAQENLIS 295
TPR: domain 4 of 5, from 344 to 377: score 27.7, E = 4.3e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a++++ +G++y++++++ +A++a+ A+el+ ++
D2021.1 344 ADTWCSIGALYQRQNQPIDALQAFICAIELNSTH 377
TPR: domain 5 of 5, from 378 to 409: score 21.7, E = 0.00023
*->aeayynlGnaylklgkydeAieayekALeldP<-*
+ a++ lG +y+k +y++A+e+++ A +P
D2021.1 378 SAAWTDLGELYEKNAQYQDALECFKNAMLNNP 409
DUF241: domain 1 of 1, from 632 to 641: score 1.6, E = 6.9
*->dgLsgLkELY<-*
d++s+L+ELY
D2021.1 632 DSFSLLSELY 641
CBS: domain 1 of 1, from 641 to 697: score 6.0, E = 6.8
*->tvspdttleealelmren...gisrlPVvded........gklvGiv
+vs d + +e++++ +++++++ + lPV +e + +++++g + iv
D2021.1 641 YVSMDISAQEIMQMVHRRtqpNSTYLPVFEEFaklpepprGPVKPIV 687
tlrDllralv<-*
t++D++ al+
D2021.1 688 TDEDVRTALE 697
CHORD: domain 1 of 1, from 903 to 915: score 6.3, E = 2.4
*->FlaipGCttGkHs<-*
F+++pGC+t H
D2021.1 903 FMKVPGCRTPAHQ 915
jmjC: domain 1 of 1, from 901 to 1009: score 164.5, E = 1.1e-46
*->wlylGmpfsttpwHiedqglySinylhfgapkvWyiiPpeyaekfek
l++++p+++tp+H+++++++Sin++++++++ W+++P+ey++k++
D2021.1 901 KLFMKVPGCRTPAHQDSNHMASININIGPGDCEWFAVPYEYWGKMH- 946
lhkflskhgpapdleggeqpdldlrhlltlisPkvlpLlenGipvyrfvQ
k++ k+g + l+ ++P++++Ll +Gipv+rf+Q
D2021.1 947 --KLCEKNG--------------VDLLTGTFWPIIDDLLDAGIPVHRFTQ 980
kpGEfVftfPGayHqVfNlGfniaeavNF<-*
k+G++V++ +Ga+H+V+ +G+++++++N+
D2021.1 981 KAGDMVYVSGGAIHWVQASGWCNNISWNV 1009
[output cut off at A = 10 top alignments]