hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/D1081.8
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Query:  D1081.8  CE05540   MYB transforming protein status:Confirmed TR:Q21119 protein_id:CAB00038.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
myb_DNA-binding Myb-like DNA-binding domain              75.5    2.8e-19   2
BEX             Brain expressed X-linked like family      6.3       0.55   1
vATP-synt_E     ATP synthase (E/31 kDa) subunit           4.4        2.5   1
trp_syntA       Tryptophan synthase alpha chain           3.8        3.6   1
Nin1_C          26S proteasome non-ATPase regulatory      2.8        6.1   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
myb_DNA-binding   1/2       8    54 ..     1    65 []    44.2  1.3e-10
myb_DNA-binding   2/2      60   104 ..     1    65 []    35.0  4.7e-08
vATP-synt_E       1/1     102   120 ..     1    19 [.     4.4      2.5
BEX               1/1     164   185 ..    79   100 ..     6.3     0.55
Nin1_C            1/1     300   306 ..   177   183 .]     2.8      6.1
trp_syntA         1/1     496   523 ..   236   265 .]     3.8      3.6

Alignments of top-scoring domains:
myb_DNA-binding: domain 1 of 2, from 8 to 54: score 44.2, E = 1.3e-10
                   *->rgrWteeEdellveavekhGkgfgIrlsltkanWkkIaekmgpgssn
                      +g+W   Ede+l++a++k+Gk+          +W++Ia ++
     D1081.8     8    GGVWKNTEDEILKAAIMKYGKN----------QWSRIASLLH----- 39

                   nvlgrtaeqcklryykyk<-*
                      +++a+qck r+  ++
     D1081.8    40 ---RKSAKQCKARWFEWL    54

myb_DNA-binding: domain 2 of 2, from 60 to 104: score 35.0, E = 4.7e-08
                   *->rgrWteeEdellveavekhGkgfgIrlsltkanWkkIaekmgpgssn
                      + +W+ eEde+l+++ ++ +++           W+ Ia  +g
     D1081.8    60    KTEWSREEDEKLLHLAKLMPTQ-----------WRTIAPIVG----- 90

                   nvlgrtaeqcklryykyk<-*
                       rt+ qc +ry  ++
     D1081.8    91 ----RTSAQCLERYEHLL    104

vATP-synt_E: domain 1 of 1, from 102 to 120: score 4.4, E = 2.5
                   *->fIrqEAeeKAeeIlaeAee<-*
                       +++EA++KAe +++eA+e
     D1081.8   102    HLLDEAQRKAEGLDEEATE    120

BEX: domain 1 of 1, from 164 to 185: score 6.3, E = 0.55
                   *->qvreikrKlREqQlrhslRavs<-*
                      q++  krK RE+Ql+  +R  s
     D1081.8   164    QGKKAKRKARERQLSDARRLAS    185

Nin1_C: domain 1 of 1, from 300 to 306: score 2.8, E = 6.1
                   *->reLErIV<-*
                      reLE+IV
     D1081.8   300    RELEQIV    306

trp_syntA: domain 1 of 1, from 496 to 523: score 3.8, E = 3.6
                   *->IeknaegeeqmleelyellslagkmKkatk<-*
                      Ie++ e++e+++++++e+ + +++mK  ++
     D1081.8   496    IEDASERAENKAKRNAEN-R-VRNMKMRSQ    523

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