Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1044.3a
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Query: D1044.3a CE27894 locus:pqn-25 status:Partially_confirmed SW:P41951 protein_id:AAK68286.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EB EB module 511.5 6.2e-150 9
pkinase Protein kinase domain 212.8 5.2e-60 1
Armadillo_seg Armadillo/beta-catenin-like repeat 16.4 0.0073 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Armadillo_seg 1/1 219 259 .. 1 40 [] 16.4 0.0073
pkinase 1/1 431 688 .. 1 285 [. 212.8 5.2e-60
EB 1/9 1028 1047 .. 25 47 .. 7.2 3.2
EB 2/9 1064 1115 .. 1 63 [] 72.4 8e-18
EB 3/9 1123 1174 .. 1 63 [] 69.5 5e-17
EB 4/9 1182 1233 .. 1 63 [] 68.6 8.7e-17
EB 5/9 1241 1279 .. 1 47 [. 44.1 3.5e-10
EB 6/9 1288 1339 .. 1 63 [] 72.4 8.3e-18
EB 7/9 1349 1400 .. 1 63 [] 87.5 2.7e-22
EB 8/9 1408 1459 .. 1 63 [] 77.9 2e-19
EB 9/9 1467 1518 .. 1 63 [] 75.4 1.2e-18
Alignments of top-scoring domains:
Armadillo_seg: domain 1 of 1, from 219 to 259: score 16.4, E = 0.0073
*->npenkqavveaGalppLvqLLs.pdeevqeeAawALsNLaa<-*
++ +++++ ++p L+ LLs +++++q +aw+L La
D1044.3a 219 EEQAREQIRIYDGVPTLLGLLSiKNSRLQWHVAWTLAQLAE 259
pkinase: domain 1 of 1, from 431 to 688: score 212.8, E = 5.2e-60
*->yelleklGeGsfGkVykakhkd.....ktgkiVAvKilkk....eke
yell +lG+G+fG+Vy ++ k ++++++ k+ A+K++ ++ +++e
D1044.3a 431 YELLDQLGAGAFGCVYTVRKKAqshseNPAKLLALKEIFMtnlnDRE 477
sikek.rflrEiqilk.rLsHpNIvrligvfedtddhlylvmEymegGdL
s+k+ +++++E++i k++L+HpNIvr+ +f ++ +ly+vm++ g +L
D1044.3a 478 SDKSFgDMISEVKIIKqQLRHPNIVRYRRIFV-ENHRLYIVMDLIQGCSL 526
fdylrrng...gplsekeakkialQilrGleYLHsng.ivHRDLKpeNIL
+d++ ++++g+++ek + ++ Q+ +l YLH +++ivHRDLKp NI+
D1044.3a 527 RDLIITMKekkGNFEEKKIWAMVVQMMLALRYLHKEKqIVHRDLKPNNIM 576
ldendgtvKiaDFGLArllesssklttfvGTpwYmmAPEvilegrgyssk
+++ v i+DFGLA++ ++l++ GT+ Y PE+ +++ +y+ k
D1044.3a 577 MTTD-ERVVITDFGLAKQKG-PEYLKSAAGTIIYS-CPEI-VQNLPYGEK 622
vDvWSlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdel
+D+WS+G+ +yE++ ++ f+
D1044.3a 623 ADIWSFGCCIYEMCQL--------------------------QPVFHS-- 644
pktridpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGs
+++l ++i++ pl++ +S++l+ L+++cL++DPs Rp
D1044.3a 645 ----TNMLTLAMQIVEA--KYDPLNEMWSDDLRFLITSCLAPDPSARP-- 686
ata<-*
+
D1044.3a 687 -DI 688
EB: domain 1 of 9, from 1028 to 1047: score 7.2, E = 3.2
*->sgCeaseQCqggwpgSvCingmC<-*
++C+++ QC +g ++C ng C
D1044.3a 1028 VTCSTNTQCASG---YTCNNGAC 1047
EB: domain 2 of 9, from 1064 to 1115: score 72.4, E = 8e-18
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
Cl+gq+ +ngqC +n vn+G+ +C++++QC gg S+C+n++C
D1044.3a 1064 CLAGQTMVNGQC----YNSVNIGS-ACQSTQQCLGG---SQCQNNIC 1102
eCpegvpkttrvngvC<-*
+C g +++vn++C
D1044.3a 1103 QCYSG---YVNVNQQC 1115
EB: domain 3 of 9, from 1123 to 1174: score 69.5, E = 5e-17
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+ g+V++n+qC ++ ++pG+ C++s QC+ + SvC+n+mC
D1044.3a 1123 CQLGTVSYNSQC----ITLASPGQ-NCQTSSQCIDN---SVCMNQMC 1161
eCpegvpkttrvngvC<-*
+C ++ ++ v+g+C
D1044.3a 1162 TCNNN---YRLVYGYC 1174
EB: domain 4 of 9, from 1182 to 1233: score 68.6, E = 8.7e-17
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+ +q+l+n+qC ++ + +Ge +C+a++QC+gg ++C +g+C
D1044.3a 1182 CQQTQTLVNNQC----VLLSIVGE-TCIANQQCVGG---AMCNSGTC 1220
eCpegvpkttrvngvC<-*
+C++g t+++g+C
D1044.3a 1221 QCTNG---ATAMYGYC 1233
EB: domain 5 of 9, from 1241 to 1279: score 44.1, E = 3.5e-10
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C s+qV+ing C +n+v +G+ +C++s+QC ++ +vC n++C
D1044.3a 1241 CNSNQVSINGMC----YNTVQVGG-SCSFSQQCLNN---AVCTNNIC 1279
<-*
D1044.3a - -
EB: domain 6 of 9, from 1288 to 1339: score 72.4, E = 8.3e-18
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+++qV+i +qC +n+v++G+ +C+ s+QC ++ S+Ci+++C
D1044.3a 1288 CSTNQVCISNQC----YNYVSIGS-QCVGSQQCLSN---SQCISSIC 1326
eCpegvpkttrvngvC<-*
+Cp+g t++ ngvC
D1044.3a 1327 QCPQG---TQQSNGVC 1339
EB: domain 7 of 9, from 1349 to 1400: score 87.5, E = 2.7e-22
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+++qVlin+qC +n+v++G +C++ +QC g+ S+C+n+mC
D1044.3a 1349 CQPNQVLINNQC----YNTVSIGF-QCQFPQQCLGN---SQCMNSMC 1387
eCpegvpkttrvngvC<-*
+Cp+g +t+vng+C
D1044.3a 1388 QCPTG---STNVNGYC 1400
EB: domain 8 of 9, from 1408 to 1459: score 77.9, E = 2e-19
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C s+qVlin+qC +n+v++G +C++ +QC g+ S+C n++C
D1044.3a 1408 CNSNQVLINNQC----YNTVSIGF-QCQFAQQCLGN---SQCLNSIC 1446
eCpegvpkttrvngvC<-*
+Cp g + +vng+C
D1044.3a 1447 QCPSG---SSNVNGYC 1459
[output cut off at A = 10 top alignments]