Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1044.7
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Query: D1044.7 CE27895 status:Predicted TR:Q95QP8 protein_id:AAK68287.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EB EB module 231.5 1.2e-65 5
TIL Trypsin Inhibitor like cysteine rich domain 5.2 2.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
EB 1/5 91 110 .. 25 47 .. 4.6 16
EB 2/5 126 177 .. 1 63 [] 76.5 5.3e-19
TIL 1/1 156 177 .. 33 61 .. 5.2 2.7
EB 3/5 179 230 .. 1 63 [] 52.0 2.6e-12
EB 4/5 238 289 .. 1 63 [] 69.6 4.5e-17
EB 5/5 299 349 .. 1 63 [] 60.3 1.5e-14
Alignments of top-scoring domains:
EB: domain 1 of 5, from 91 to 110: score 4.6, E = 16
*->sgCeaseQCqggwpgSvCingmC<-*
++C ++ QC +g + C ng C
D1044.7 91 VTCFTNSQCASG---YICSNGAC 110
EB: domain 2 of 5, from 126 to 177: score 76.5, E = 5.3e-19
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C +gq++++gqC +n vn+G+ C+ seQC gg S+C+n+ C
D1044.7 126 CFTGQISVGGQC----FNSVNIGD-RCQRSEQCLGG---SQCQNNLC 164
eCpegvpkttrvngvC<-*
+Cp+g + +vn++C
D1044.7 165 QCPNG---FANVNQKC 177
TIL: domain 1 of 1, from 156 to 177: score 5.2, E = 2.7
*->gtSpkvPstCkeg.CvCqpGyVrnndgdkC<-*
g s+C+ + C+C++G+ n+ kC
D1044.7 156 G------SQCQNNlCQCPNGFANVNQ--KC 177
EB: domain 3 of 5, from 179 to 230: score 52.0, E = 2.6e-12
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+ g+Vl n+qC ++ ++pG+ C+ s QC+ + SvC n+mC
D1044.7 179 CQLGTVLFNSQC----ITLASPGQ-NCQISSQCIDN---SVCNNQMC 217
eCpegvpkttrvngvC<-*
C + ++ v g+C
D1044.7 218 SCNGN---YRLVFGYC 230
EB: domain 4 of 5, from 238 to 289: score 69.6, E = 4.5e-17
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C+ +q+l+n+qC ++ + +Ge +C+a++QC+gg ++C +g+C
D1044.7 238 CQQTQTLVNNQC----VLLSIVGE-TCIANQQCVGG---AMCNSGTC 276
eCpegvpkttrvngvC<-*
+C++g t+++g+C
D1044.7 277 RCTNG---ATAMYGYC 289
EB: domain 5 of 5, from 299 to 349: score 60.3, E = 1.5e-14
*->ClsgqVlingqCvakelnkvnpGesgCeaseQCqggwpgSvCingmC
C s+qV +ngqC +n+vn+G +C+ ++QC g+ S+C+n+ C
D1044.7 299 CNSNQVYYNGQC----YNTVNIGF-QCQITQQCLGN---SQCQNSFC 337
eCpegvpkttrvngvC<-*
+C+ g + ng C
D1044.7 338 QCTSG----SPNNGIC 349