Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/D1014.5
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Query: D1014.5 CE07007 status:Partially_confirmed TR:Q18918 protein_id:AAA96284.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF23 Domain of unknown function 113.5 3.9e-30 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF23 1/1 442 601 .. 1 242 [. 113.5 3.9e-30
Alignments of top-scoring domains:
DUF23: domain 1 of 1, from 442 to 601: score 113.5, E = 3.9e-30
*->kafiycrYydcnskeigknafasvvsmnktfhipnfpesvvsCprry
++ycrY dc k g++ s+v +pes+v+Cprr
D1014.5 442 SETVYCRYHDCYKKGMGDP-KPSFV----------YPESTVYCPRRA 477
gaktvsfyvhhscyyvtvvaganllpnlskleivsigtrvsfeknegdev
gak++s +s +++
D1014.5 478 GAKYIS---------------------------------ISETLDT--IG 492
eeiPvklirrkkttnvdalspepykeppheltvCvaPlYgaEeqWlnfve
++ Pv++++r +p+h ltvCv Pl l++
D1014.5 493 QY-PVQIVKRQ--------------RPEHFLTVCV-PLNDENVNILEVAR 526
fvEhyklqGAthFyfYlhsiteydfkvLdeYeklGyveiipWpdmkfrsd
f+E+yklqGAt+F++Y+ ++++y ++L++Y k+G+v +++ + +
D1014.5 527 FIEYYKLQGATFFNVYYKNMSKYQTMLLEDYTKTGDVKLVKVGSESTEQI 576
siphkypepnsnVelrnqaaAqnDClLrsKeaskwiafaDlDErL<-*
+ + DC +rsK++skw+af+ l +rL
D1014.5 577 EAN--------------------DCQHRSKYFSKWTAFLALNDRL 601