Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C56G2.1a
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Query:  C56G2.1a  CE24866    status:Partially_confirmed TN:AAM22053 protein_id:AAM22053.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
TUDOR    Tudor domain                                   108.6    9.4e-29   1
KH       KH domain                                       41.9    1.7e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KH         1/1     532   583 ..     1    49 []    41.9  1.7e-10
TUDOR      1/1     634   758 ..     1   124 []   108.6  9.4e-29

Alignments of top-scoring domains:
KH: domain 1 of 1, from 532 to 583: score 41.9, E = 1.7e-10
                   *->evlvpasrvGliIGkgGsnIkeireetgakIdipddse...gsveri
                      e+++p+s+vGliIG +G++Ike+  +t++++ i++++e+++  +  i
    C56G2.1a   532    EFEIPNSLVGLIIGVKGKTIKELSVRTNVRMLIRQHHEtdkVKTHQI 578

                   vtitg<-*
                   ++++g
    C56G2.1a   579 CQVRG    583

TUDOR: domain 1 of 1, from 634 to 758: score 108.6, E = 9.4e-29
                   *->epegstvdvvvshiespgeFyv.qqpksdskkleklmeelqeyyssk
                      +pe+ +++v vs i s ++F+++q+++++ ++l +l   ++++y ++
    C56G2.1a   634    LPEDIKCEVAVSSIISASHFFIqQPTHPSFASLRHLDMYMGSLYGEQ 680

                   ppvaelptp.vgdgcvavfseDgkWyRAri.tvelddelveVffvDyGnt
                    +  ++++ ++  g ++++++ ++W+RA   +   ++++v V fvDyG +
    C56G2.1a   681 SN-LPELPIpCQNGLLCAAPVGNAWFRAVTvQYFDETDEVFVKFVDYGGY 729

                   etvplsdlrplpppefalLPpqaikcrLag<-*
                    +  ++dlr+++ +++++LP+q++++ La+
    C56G2.1a   730 SKMARQDLRQIR-TDLMSLPFQSTEVMLAH    758



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