Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C56G2.1a
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Query: C56G2.1a CE24866 status:Partially_confirmed TN:AAM22053 protein_id:AAM22053.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TUDOR Tudor domain 108.6 9.4e-29 1
KH KH domain 41.9 1.7e-10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
KH 1/1 532 583 .. 1 49 [] 41.9 1.7e-10
TUDOR 1/1 634 758 .. 1 124 [] 108.6 9.4e-29
Alignments of top-scoring domains:
KH: domain 1 of 1, from 532 to 583: score 41.9, E = 1.7e-10
*->evlvpasrvGliIGkgGsnIkeireetgakIdipddse...gsveri
e+++p+s+vGliIG +G++Ike+ +t++++ i++++e+++ + i
C56G2.1a 532 EFEIPNSLVGLIIGVKGKTIKELSVRTNVRMLIRQHHEtdkVKTHQI 578
vtitg<-*
++++g
C56G2.1a 579 CQVRG 583
TUDOR: domain 1 of 1, from 634 to 758: score 108.6, E = 9.4e-29
*->epegstvdvvvshiespgeFyv.qqpksdskkleklmeelqeyyssk
+pe+ +++v vs i s ++F+++q+++++ ++l +l ++++y ++
C56G2.1a 634 LPEDIKCEVAVSSIISASHFFIqQPTHPSFASLRHLDMYMGSLYGEQ 680
ppvaelptp.vgdgcvavfseDgkWyRAri.tvelddelveVffvDyGnt
+ ++++ ++ g ++++++ ++W+RA + ++++v V fvDyG +
C56G2.1a 681 SN-LPELPIpCQNGLLCAAPVGNAWFRAVTvQYFDETDEVFVKFVDYGGY 729
etvplsdlrplpppefalLPpqaikcrLag<-*
+ ++dlr+++ +++++LP+q++++ La+
C56G2.1a 730 SKMARQDLRQIR-TDLMSLPFQSTEVMLAH 758