Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C56E6.2
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C56E6.2 CE30372 GTP-binding status:Partially_confirmed TR:Q18898 protein_id:AAA81090.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ras Ras family 189.7 2.8e-55 2
ABC_tran ABC transporter 3.8 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ABC_tran 1/1 52 69 .. 1 18 [. 3.8 6
ras 1/2 54 198 .. 1 153 [. 185.3 5.8e-54
ras 2/2 213 265 .. 168 198 .] 4.2 3.7
Alignments of top-scoring domains:
ABC_tran: domain 1 of 1, from 52 to 69: score 3.8, E = 6
*->GevlalvGpNGaGKSTLL<-*
+++++G +G GK++++
C56E6.2 52 KAKVVVLGDSGVGKTSII 69
ras: domain 1 of 2, from 54 to 198: score 185.3, E = 5.8e-54
*->KlVliGDsGVGKSsLliRFtdn.kFveeYipTIGvDFytktvevD..
K+V++GDsGVGK+s+ +R+ ++ ++ + +TIG+ F + +v D +
C56E6.2 54 KVVVLGDSGVGKTSIIYRHRYGaHYRPV-NATIGASFVSFDVGADyr 99
..GktvkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvkk
++ +v+Lq+WDTAGQERFr + p+Y+R+A+++L+VYD+T+r +Fe v k
C56E6.2 100 drEDVVRLQVWDTAGQERFRCMVPMYMRNADAALIVYDVTDRNTFEDVEK 149
WleeilrhadkdenvpivLVGNKcDLeddedleltegqkRvVsteeGeal
Wl++++r + ++ + L+GNK+DL + kR+V+ +eG+a+
C56E6.2 150 WLKDLDRSSGTED-ANVYLIGNKTDLVE----------KREVTEAEGKAM 188
AkelgAlpFmE<-*
A +++ ++F+E
C56E6.2 189 AAKIN-AKFFE 198
ras: domain 2 of 2, from 213 to 265: score 4.2, E = 3.7
*->elareilkkvse........................vnvnldqpakk
el ++l+ ++e+++++++ + ++++ + ++++ ++n+n++ + +k
C56E6.2 213 ELSDDVLQSRQEssekktdlqlirkekvslgddkfeDNPNIQLKIQK 259
kkskCcil<-*
+ kCc++
C56E6.2 260 S--KCCSM 265