hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C56C10.6
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Query:  C56C10.6  CE29490   Casein kinase status:Partially_confirmed TR:Q18882 protein_id:AAA68774.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
pkinase        Protein kinase domain                     56.9    1.1e-14   1
Sec7           Sec7 domain                                4.4        4.6   1
Ribosomal_L19e Ribosomal protein L19e                     3.8        5.9   1
DUF646         Bacteriophage protein of unknown funct     3.6          8   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
DUF646           1/1      98   124 ..     1    30 [.     3.6        8
Ribosomal_L19e   1/1     116   131 ..     1    16 [.     3.8      5.9
pkinase          1/1      24   180 ..     1   155 [.    56.9  1.1e-14
Sec7             1/1     337   380 ..     1    46 [.     4.4      4.6

Alignments of top-scoring domains:
DUF646: domain 1 of 1, from 98 to 124: score 3.6, E = 8
                   *->MvsleDaLnewldtaesistnltVeDqAkI<-*
                      M++l + Ln ++++++      tV  q+ I
    C56C10.6    98    MTLLGESLNKIVKRIAR---QITVSSQVRI    124

Ribosomal_L19e: domain 1 of 1, from 116 to 131: score 3.8, E = 5.9
                   *->mdLslQKRLAAsVLkc<-*
                        +s Q R+AA VL c
    C56C10.6   116    ITVSSQVRIAANVLFC    131

pkinase: domain 1 of 1, from 24 to 180: score 56.9, E = 1.1e-14
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
                      +++++klGeG+ G+Vy++k++ +++ + A+K  + +     +  +
    C56C10.6    24    WQVIRKLGEGGCGSVYLVKNL-EDETEAAMKAES-NGAAGGC-VLKL 67

                   EiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrrnggp
                   E++ilk+Ls+ p++++++ + +   d  y++m +++  +L+++++r  ++
    C56C10.6    68 EVAILKKLSgKPHVCQFLFAAR-LTDFTYVIMTLLGE-SLNKIVKRIARQ 115

                   lsekeakkialQilrGleYLHsngivHRDLKpeNILlden.....dgtvK
                   ++    ++ia  +l  l+ +H+ g++HRDLKp+N  l  +++++++ +
    C56C10.6   116 ITVSSQVRIAANVLFCLKQIHDIGFIHRDLKPANMALGYKtnndeCRFFH 165

                   iaDFGLArlle.sss<-*
                   + DFGLAr+++ s+s
    C56C10.6   166 VLDFGLARQFVvSQS    180

Sec7: domain 1 of 1, from 337 to 380: score 4.4, E = 4.6
                   *->pksrkkqliegpkkfNqkpkkGiqdLiskgflasdkdpqdiAsfLl<
                      +k+++++++  +k++ +++k++++ +i+k++++  k ++d As+++
    C56C10.6   337    KKASREKTLSKEKTSKEDIKTARKTSIEKDVKE--KLSKDMASKEK  380

                   -*

    C56C10.6     -    -

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