Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C55F2.1a
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Query: C55F2.1a CE29737 transferase status:Partially_confirmed TR:Q95QQ5 protein_id:AAL27233.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
AICARFT_IMPCHas AICARFT/IMPCHase bienzyme 462.9 2.6e-135 3
MGS MGS-like domain 194.4 1.8e-54 1
Amelogenin Amelogenin 2.2 7 1
Herpes_U34 Herpesvirus virion protein U34 1.6 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MGS 1/1 29 152 .. 1 134 [] 194.4 1.8e-54
Amelogenin 1/1 247 261 .. 1 15 [. 2.2 7
AICARFT_IMPCHas 1/3 157 333 .. 1 203 [. 237.7 1.7e-67
AICARFT_IMPCHas 2/3 348 444 .. 201 307 .. 133.8 3.1e-36
Herpes_U34 1/1 483 496 .. 1 14 [. 1.6 9.2
AICARFT_IMPCHas 3/3 484 536 .. 314 366 .] 91.3 4.4e-24
Alignments of top-scoring domains:
MGS: domain 1 of 1, from 29 to 152: score 194.4, E = 1.8e-54
*->aLiSvsDkdKkaellplAkkLvelGrykLyATgGTadfLrenGvpvt
a iSvsDk+ +l plA++Lv++G +L+A+gGTa+++r++G+ v
C55F2.1a 29 AIISVSDKT---GLIPLAHGLVSAG-LTLIASGGTAKAIRDQGIDVH 71
evvekteegerpgGrvkTLHPaVHGGILArrilesivdliangeIdpiDl
+v+++t+++e++gGrvkTLHPaVHGGILAr++++ +++++++++I ++++
C55F2.1a 72 DVADVTKFPEMLGGRVKTLHPAVHGGILARDTES-DRKDLEKHNISFVSV 120
VINlpspfretvrssnfstdGytiRRlAvdygiPliT<-*
V+++++pf++tv s +++++++++++++i+++T
C55F2.1a 121 VVCNLYPFKKTVQS-----KDCSVEEAVENIDIGGVT 152
Amelogenin: domain 1 of 1, from 247 to 261: score 2.2, E = 7
*->lPLpphpghpGYvnf<-*
+P+ g+pGY+n+
C55F2.1a 247 MPIKVLNGSPGYINI 261
AICARFT_IMPCHas: domain 1 of 3, from 157 to 333: score 237.7, E = 1.7e-67
*->AAKNHkdVtivvDPaDYsavLealkeneGsltLqtRrqLAlKAFeHT
AAKNH +V +++DPaDY+ ++++lk+ G+ t + R+ LAlKAFeHT
C55F2.1a 157 AAKNHERVSVICDPADYDHIISELKS--GGTTRERRQLLALKAFEHT 201
AaYDaaIadYFrklyspYHieekeeAvgkFPrqfglsgvrkqpLRYGENP
+YD+ I+ ++r ++ +g+r +pLRYG NP
C55F2.1a 202 TSYDESISGFMRRRFAG-------------------NGERALPLRYGTNP 232
HQsAAfYvdktqaegsaGGiAkAeqLqGKelSYNNllDADAAwrlVkEFe
HQ+ + +++ + e ++++L+G+ ++Y+N+lD ++ w+lVkE++
C55F2.1a 233 HQKDDAELYIVEDE------MPIKVLNGS-PGYINILDGLNGWQLVKELS 275
nalgePAavivKHaNPCGVAlGlPLSdvEkkVyfVsDl..keltpsiaeA
a + PAa+++KH++P+G+A+GlPL + E+ ++VsDl+ + ps+a+A
C55F2.1a 276 DATKMPAAASFKHVSPAGAAVGLPLNETEAACCMVSDLpiDTKKPSLAAA 325
YaRAreAD<-*
YaRAre D
C55F2.1a 326 YARAREQD 333
AICARFT_IMPCHas: domain 2 of 3, from 348 to 444: score 133.8, E = 3.1e-36
*->eADptSAFGGIiAlNdeVDveTAkaiskrrPtDGeTreFlEvIIAPg
+AD++S+FG++iAl+ ++D+ TAk+i + e++++++AP+
C55F2.1a 348 GADRMSSFGDFIALSEKCDELTAKIINR---------EVSDGVVAPD 385
yeeEALevLakKKNlRvlvlqedaagvp.elelrqVsGGlLvQdrDqLDd
+++ AL +LakKKN++++vl+ ++++ p+e e r+V+G+ L Q+r+ +
C55F2.1a 386 FDPAALSLLAKKKNGNYCVLKINPNYLPsETEERTVFGLRLRQKRN---N 432
ggvdksefs.vV<-*
+++++++f++vV
C55F2.1a 433 AVINAETFNnVV 444
Herpes_U34: domain 1 of 1, from 483 to 496: score 1.6, E = 9.2
*->eLkkkmyddLvlaT<-*
L+k + ddL+ aT
C55F2.1a 483 QLNKQAIDDLIVAT 496
AICARFT_IMPCHas: domain 3 of 3, from 484 to 536: score 91.3, E = 4.4e-24
*->LpeqeLeDLlfAWkVvKhVKSNAIViAKNgmtvGiGAGQmsRVdSar
L +q+ DL++A++++K+ +SN+++ A g+++G+GAGQ+sR++++r
C55F2.1a 484 LNKQAIDDLIVATIALKYAQSNSVCFAHRGQVIGMGAGQQSRIHCTR 530
iAgdKa<-*
+AgdKa
C55F2.1a 531 LAGDKA 536