Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C53D6.2
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Query: C53D6.2 CE24863 locus:unc-129 bone morphogenetic protein like status:Confirmed TR:O44371 protein_id:CAB61007.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TGF-beta Transforming growth factor beta like domain 64.5 1.2e-17 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TGF-beta 1/1 309 407 .] 1 112 [] 64.5 1.2e-17
Alignments of top-scoring domains:
TGF-beta: domain 1 of 1, from 309 to 407: score 64.5, E = 1.2e-17
*->arpCrlrsLyVdFrdlGWgdWiiaPegyiAnYCsGeCpfpladdlnl
++ C++ V+++ GW++ +i+P++ + +C+G+C p+ ++ ++
C53D6.2 309 KNRCHKEGVLVSLKHFGWDRYVIEPKTIETSFCKGKCAKPMLTSGKA 355
slsfhnHAilqtlvrllsnParavpkPCCvPtPklsplsvLylDdnsnVv
s nHA lq+l + +P CC+Pt l +l + y D+++++v
C53D6.2 356 S----NHAMLQSLF-AA-EP------VCCAPT-NLKSLNFWYRDEKGRTV 392
lkvyeNMvVeeCGCr<-*
+++y+ M +C C
C53D6.2 393 IRNYSKMLIGSCSCL 407