hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C52E2.4
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Query:  C52E2.4  CE25828    status:Partially_confirmed TR:Q95Y49 protein_id:AAK67219.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
FTH             FTH domain                              103.3    4.6e-27   2
F-box           F-box domain                             11.8       0.23   1
MAP             MAP domain                                4.1          8   1
Herpes_DNAp_acc Herpes DNA replication accessory fact     2.2        8.4   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Herpes_DNAp_acc   1/1      20    29 ..   445   454 .]     2.2      8.4
MAP               1/1     198   219 ..    17    38 ..     4.1        8
FTH               1/2     127   250 ..    23   153 .]    54.4  1.9e-13
F-box             1/1     327   367 ..     8    46 .]    11.8     0.23
FTH               2/2     464   615 ..     1   153 []    57.0  3.8e-14

Alignments of top-scoring domains:
Herpes_DNAp_acc: domain 1 of 1, from 20 to 29: score 2.2, E = 8.4
                   *->klKltFNPLI<-*
                      +l+l+FN+++
     C52E2.4    20    SLRLAFNHFV    29

MAP: domain 1 of 1, from 198 to 219: score 4.1, E = 8
                   *->eLkFsndskisykDLtkKVKsv<-*
                      +++F ++s+is+ D+t+ VK++
     C52E2.4   198    DFAFCKASRISTDDITTLVKNA    219

FTH: domain 1 of 2, from 127 to 250: score 54.4, E = 1.9e-13
                   *->kislsgfsfsevasILpyFdagtLeeIelkssssseiddferiveLe
                      +++l+  ++s++   L++F++ +L ++++ s s  ++ d+e+iv++e
     C52E2.4   127    TLHLQADHVSQLRFALKCFNPSKLLRLHI-SGSNRNTLDLEDIVKME 172

                   QWKnAKslkiessvvssfpIEhLfHFeeFditldsfsveDAiKIRDiLlk
                   +WKnAK++++ +++vs+ p+ ++ HF     + +++s++D+  + ++  +
     C52E2.4   173 HWKNAKIIELFGFIVSI-PFDNFRHFDFAFCKASRISTDDITTLVKNASS 221

                   sstFesctiFesdvfefsnsnpieiarvFd.Pdye<-*
                    s +  ++i       +++++ +  + ++++++ e
     C52E2.4   222 ASRLHTFII------YYVCLDEDVTESFLNnLIGE    250

F-box: domain 1 of 1, from 327 to 367: score 11.8, E = 0.23
                   *->dellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<-*
                      + ++++I+  Ld+ +l++l++VS   r+++   ++  + +
     C52E2.4   327    PVIMEHIVHGLDFYELVVLRKVSYEIRQCIEYIkPDPkLVA    367

FTH: domain 2 of 2, from 464 to 615: score 57.0, E = 3.8e-14
                   *->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
                       +  ++ le + k  +  l+V+k+++++ +++ +a IL   d+ +++
     C52E2.4   464    NQFMIKLLEGIIKR-VVFLPVEKMTIETDELELMARILLLSDSSSIK 509

                   eIel...kssssseiddferiveLeQWKnAKslkiessvvssfpIEhLfH
                    Iel+++++s +  ++  e+++ L +W+nA+++ i  +  ss  I+   H
     C52E2.4   510 VIELrrrYPSGFILNEFMEQLASLAHWRNAEEFMINIFLPSS-SIKTVIH 558

                   FeeFditldsfsveDAiKIRDiLlksstFescti.Fe.sdvfefsnsnpi
                   F ++di l+ +s+eD++++++ +l ss+F++++ +F+++dv      ++i
     C52E2.4   559 FAKVDIRLEAISMEDVLYLKEKFLLSSKFRQFKAeFTdTDV-----DESI 603

                   eiarvFd.Pdye<-*
                   + ++++++P+++
     C52E2.4   604 FEVNFLGePFRR    615

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