Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C50F4.10
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C50F4.10  CE05474   serine\/threonine kinase status:Partially_confirmed TR:Q18738 protein_id:CAA94735.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
pkinase  Protein kinase domain                           27.0    2.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
pkinase    1/1     109   260 ..    75   249 ..    27.0  2.2e-06

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 109 to 260: score 27.0, E = 2.2e-06
                   *->ylvmEymegGdLfdylrrng.gplsekeakkialQilrGleYLHsng
                      y+vm + +   L dy++   +g++s + a+++  Q+ ++le LH++g
    C50F4.10   109    YIVMHMIGR-ALVDYMKTSMsGAISVNCALSVGIQLIEALEDLHNCG 154

                   ivHRDLKpeNILlden....dgtvKiaDFGLArlle.......ssskltt
                   ++HRDLKp+NI + ++++++ g++ +  FG++r + +++++ +    +
    C50F4.10   155 FIHRDLKPSNICFGRKdrneLGKLYLLSFGISRRYLdsknqmrKPRDNVE 204

                   fvGTpwYmmAPEvilegrgysskvDvWSlGviLyElltggplfpgadlpa
                   f GT +Y  +  +  + ++  +k D  S+ +++ E+ tg
    C50F4.10   205 FRGTVRYA-SLNC-HQLQELNRKDDLESAFYVIVEMITG----------- 241

                   ftggdevdqliifvlklPfsdelpktridpleelfriikr<-*
                                  +lP+++          +++ r +++
    C50F4.10   242 ---------------QLPWKG------LPDGAAVARVKQQ    260



[DB home][top]