hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C49H3.10
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Query:  C49H3.10  CE29726    status:Partially_confirmed TR:Q9GYQ7 protein_id:AAF99897.3

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Exportin-t      Exportin-t                              633.0   2.3e-187   1
ZU5             ZU5 domain                                4.1        9.1   1
Glyco_transf_10 Glycosyltransferase family 10 (fucosy     4.1          3   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Glyco_transf_10   1/1     496   526 ..   465   502 .]     4.1        3
ZU5               1/1     547   586 ..    41    87 ..     4.1      9.1
Exportin-t        1/1     590   937 ..     1   440 [.   633.0 2.3e-187

Alignments of top-scoring domains:
Glyco_transf_10: domain 1 of 1, from 496 to 526: score 4.1, E = 3
                   *->VlEydegfCrvCrllqkapdllelSryktipnlakWFq<-*
                      Vl y e+ Cr+ rll   p      ++++ip +a++F
    C49H3.10   496    VL-YFELACRYERLLVLQP------QPVVIPHIAAAFL    526

ZU5: domain 1 of 1, from 547 to 586: score 4.1, E = 9.1
                   *->cYlvvhkklstpPPlDkeegetLlSPvvecGPCDVSmSAhGalllrP
                      c++v+++k +  P+   +e  t l P+++++P      A  ++ll+P
    C49H3.10   547    CRFVKSHKTVLGPLV--SEVITRLAPLLAVSP-----QADTNQLLSP 586

                   <-*

    C49H3.10     -     -

Exportin-t: domain 1 of 1, from 590 to 937: score 633.0, E = 2.3e-187
                   *->lYIFEaiGvLIvlgdltaEkksayvsePiDYDLltpLlekfeagLee
                      +YIFEa+++LIv+gdlt+E+ks+yv+e     L+++L++kfe+gL+e
    C49H3.10   590    GYIFEATATLIVFGDLTSEMKSQYVGE-----LASTLAMKFENGLVE 631

                   lltAsaeKAdeeiieadcqlmSNaiGilArgskafenketakanmvvnKK
                   l+tA+a+KAdee+i+a++q+mSN+iG+++r+skaf+n++++ka
    C49H3.10   632 LNTARARKADEETIQAILQFMSNIIGYSSRMSKAFNNAQSMKA------- 674

                   LincscievyleilevlLrtlSefnkvedLRsavRfflhRlivvLenevL
                      c+ci++yl++++++L+tlS++n  ++L++++R+f+hRl+v++ene++
    C49H3.10   675 ---CNCIDIYLRLIKLYLETLSPQN--AFLLESTRQFAHRLVVSMENELM 719

                   PyipkliekLALkstdlksWemvdfLvflsQliakFktDkamleilnqll
                   Py++++++kLAL+stdl+  +m+++L+f++Q++ak+k  kaml+++++l+
    C49H3.10   720 PYMNGIFDKLALVSTDLD--SMHHLLIFCHQTVAKYK--KAMLTSGVDLG 765

                   pvLlvrifsvLerdaeeqdqdaavekPiDtAvtAtsvnKnivvtDSyRdk
                   +vL+++++++L+    eq++++++++                  DS+R++
    C49H3.10   766 NVLAIAARASLQ----EQENNIPAKD------------------DSQRAL 793

                   lllrkaYvsfLytvlnsgvtsvLateeneavldvvlnslvrlAleyldpa
                   l++++a+v++Lytv++s++t++L+t++++  ld+vl+s++rlAl+++++a
    C49H3.10   794 LYVQRAFVQLLYTVIASDCTPALNTTPGL--LDHVLESAARLALSSDQTA 841

                   smmqlslnalcskivslwggkdGrvDDinKDPnLKiDGfenFvlshivpn
                   ++++ls++a++s+i+++w+++++rv            ++e+++lshi+p
    C49H3.10   842 QKVALSCLAKISLITPSWSARTLRV------------ALEIPSLSHITP- 878

                   iCFeiPlnpsYKFNlkDAnsllvlgElaalLkvlheksgdPttnEnefvk
                            s      DA+s+lv++E++a+L++lh++++d      +f++
    C49H3.10   879 ---------S------DAGSTLVVHEVCATLTSLHQSDPD------GFTR 907

                   yLvqvYlPsvqvPqelaeqylqaLtnldGFnKtgksFkksirv<-*
                   +L+++      vP+++++q+l+aLtnl+     gk+++k  +v
    C49H3.10   908 ALREL------VPNGFSDQLLSALTNLK-----GKNLDK--QV    937

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