Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm2/seq/C49F5.1
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Query: C49F5.1 CE08852 s-adenosylmethionine synthetase status:Confirmed SW:O17680 protein_id:CAB03975.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
S-AdoMet_syntD2 S-adenosylmethionine synthetase, cent 297.2 2e-85 1
S-AdoMet_syntD3 S-adenosylmethionine synthetase, C-te 296.1 4.3e-85 1
S-AdoMet_synt S-adenosylmethionine synthetase, N-te 218.2 1.3e-63 1
DUF419 Protein of unknown function (DUF419) 6.9 1.1 1
FokI_C Restriction endonuclease FokI, cataly 2.8 5 1
HCV_NS4a Hepatitis C virus non-structural prot 2.3 6.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
S-AdoMet_synt 1/1 3 103 .. 1 101 [] 218.2 1.3e-63
S-AdoMet_syntD2 1/1 115 237 .. 1 123 [] 297.2 2e-85
HCV_NS4a 1/1 252 268 .. 272 288 .] 2.3 6.7
FokI_C 1/1 285 299 .. 90 104 .. 2.8 5
DUF419 1/1 327 344 .. 112 129 .] 6.9 1.1
S-AdoMet_syntD3 1/1 239 388 .. 1 150 [] 296.1 4.3e-85
Alignments of top-scoring domains:
S-AdoMet_synt: domain 1 of 1, from 3 to 103: score 218.2, E = 1.3e-63
*->ekfLFtsesvsEGHPDKiaDqisDavLDaiLkqDPkakvACEtvvkt
+kfLFtsesvsEGHPDK++DqisDavLDa+LkqDP+akvACEtv+kt
C49F5.1 3 SKFLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKT 49
gmvlvaGEittkavvdyekvvRetikeiGyddskkGfDaktcavLvaieq
gmv+++GEit+kavvdy+ +vR +i++iG++ds+ GfD ktc+vLva+eq
C49F5.1 50 GMVMLCGEITSKAVVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQ 99
qspd<-*
qsp+
C49F5.1 100 QSPE 103
S-AdoMet_syntD2: domain 1 of 1, from 115 to 237: score 297.2, E = 2e-85
*->ediGAGDQGiMFGYATdETeelMPLtilLAHKLnaklaevRkdGtLp
ed+GAGDQGiMFGYATdETee MPLt++L+HK na l+++R++GtLp
C49F5.1 115 EDVGAGDQGIMFGYATDETEETMPLTLILSHKINAELHKLRRNGTLP 161
WLRPDgKTQVTveYdedkGavvPvRVdTVVvStQHseeitleeLreelke
W+RPD+K+QVT+eY++ +Ga P+RV+TVVvStQHs+++tle Lre +++
C49F5.1 162 WVRPDSKSQVTIEYESRHGATIPLRVHTVVVSTQHSPDVTLEKLRETILA 211
kVIkpViPakyLdekTifhInPsGrF<-*
VIk+ViPa +Lde T+fhInP+G F
C49F5.1 212 DVIKKVIPASLLDESTVFHINPCGTF 237
HCV_NS4a: domain 1 of 1, from 252 to 268: score 2.3, E = 6.7
*->kvlvdiLgGYgagVsgA<-*
k++vd gG+ga gA
C49F5.1 252 KIIVDTYGGWGAHGGGA 268
FokI_C: domain 1 of 1, from 285 to 299: score 2.8, E = 5
*->aRmlaGvLvklGLvk<-*
aR++a Lvk+GL+k
C49F5.1 285 ARWVATSLVKAGLAK 299
DUF419: domain 1 of 1, from 327 to 344: score 6.9, E = 1.1
*->vpdeelreLveqSYdLvv<-*
++deel ve+S+dL+
C49F5.1 327 LTDEELHQIVEDSFDLTP 344
S-AdoMet_syntD3: domain 1 of 1, from 239 to 388: score 296.1, E = 4.3e-85
*->iGGPqGDaGLtGRKiivDtYGGwgahGgGaFsGKdptKvDRsaAYaa
+GGP+GDaG+tGRKiivDtYGGwgahGgGaFsGKdptKvDRsaAYaa
C49F5.1 239 VGGPMGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAA 285
RwvAKslvaagLarrclvqlsYAiGvaePlsilvdtygtskkseeellei
RwvA slv+agLa+r+lvqlsYAiG+a+P+s+lv +gts ++eel +i
C49F5.1 286 RWVATSLVKAGLAKRVLVQLSYAIGIAKPISVLVYAFGTSPLTDEELHQI 335
vrenFDlRPgvivkeLdLkkpiYkktaayGHFgreefpWekpkklkelke
v++ FDl Pg+i+keLdLk+piY+kta++GHFg+ efpWe+pk+lk +
C49F5.1 336 VEDSFDLTPGKIIKELDLKRPIYEKTAENGHFGHSEFPWEQPKALKISPA 385
alk<-*
+l+
C49F5.1 386 LLE 388