hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm2/seq/C49C3.1
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Query:  C49C3.1  CE18554  locus:snf-9 Sodium:neurotransmitter symporter family (2 domains) status:Partially_confirmed TR:Q9XUG5 protein_id:CAB05

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SNF      Sodium:neurotransmitter symporter family       397.2   1.6e-115   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SNF        1/2      44   198 ..     1   174 [.   148.0  1.7e-40
SNF        2/2     266   534 ..   207   515 ..   252.9  4.3e-72

Alignments of top-scoring domains:
SNF: domain 1 of 2, from 44 to 198: score 148.0, E = 1.7e-40
                   *->RetWsgKldFvLSvvGfaVGLGNVWRFPYLCYKNGGGAFLiPYlIfL
                      R++W+++++F+LS  G aVGLGN+WRFP ++Y NGG AFL+PY+  +
     C49C3.1    44    RGAWGNQIEFLLSTLGMAVGLGNIWRFPTRAYNNGGSAFLVPYVACA 90

                   ivaGIPLFFLElaLGQytreGsitvWrkKiLDKGKGIcPlFkGiGYasiv
                   +  G P  +LE  LGQy+r  ++ ++r+        ++P+++G+G++++
     C49C3.1    91 LLFGLPAVYLEFLLGQYHRTTAPIIFRR--------FAPILQGVGWMAVA 132

                   iafyigiYYnVIiAWalyYLfs.SFTteLPWatCnnsw.NtpnCveefdk
                   ++++++iYY++Ii+W+  Y  s  + ++  W  C+nsw+N++ Cv+
     C49C3.1   133 VSSLVAIYYIIIIGWSTVYMASiVMGHTSKWNRCGNSWnNAESCVD---- 178

                   enssngslpatavnlsnlssyslertSPv<-*
                     +       + +  ++ ++ + + tSPv
     C49C3.1   179 -SG-------LQPLCAS-FNATGNETSPV    198

SNF: domain 2 of 2, from 266 to 534: score 252.9, E = 4.3e-72
                   *->laWivvYfclwKGVksGsGKVVYFTATFPYvvLivLLiRGVTLPGAa
                      ++W++v ++lwKGV    GK +Y+  T+PY++ i L++RG+TL GA
     C49C3.1   266    ACWLIVVLILWKGVGY-MGKASYVIVTLPYFIIILLFFRGITLDGAE 311

                   dGIkfYL.tPdfskLldPqVWiDAatQIFFSLGiGFGvLiAlaSYNkfhN
                   dGI +YL+ Pd+sk   P  W +A+ Q +FSLGiG G+Li +aS  k +N
     C49C3.1   312 DGIYYYLgNPDWSKVFMPATWGEALKQLCFSLGIGYGGLIGMASFSKPNN 361

                   NcYrDaiivsfiNsiTSflAGFvIFSiLGFMANIvqeqGvpHvNlSalTa
                   Nc rDa+iv +  ++ S++ G ++FS LGF A    ++G
     C49C3.1   362 NCFRDALIVIIGDTMMSLVGGAAVFSTLGFLA---KKKGCS--------- 399

                   DYsvYdvIseVAeseFvLgLaClEDELdKVqGPGLAFiaYPeAvtmlPlS
                          ++eV  +                 G +LAF+a+PeA+  +Pl+
     C49C3.1   400 -------VAEVVND-----------------GFSLAFVAFPEALGRMPLP 425

                   pfWavLFFlMLltLGLDSqFggvEgiITAlvDefprvlilkkrrelftlg
                   ++W++LFFlML +LG+ +  + v ++ + + D f     l+kr+ l+ ++
     C49C3.1   426 ELWSFLFFLMLFFLGISTEVAYVNVFCSSICDQF---VNLRKRKWLVAVL 472

                   vcvasfligLlmvTeGGiYvftLFDdYaAsGfsLLfvvflEciavawvYG
                    c+  +++g +mvT+GG Y+f +FD+YaA+ +s   +v +E+++va+vYG
     C49C3.1   473 WCLVLYVLGVVMVTDGGFYWFIMFDEYAAG-VSSCCAVTAEVLIVAYVYG 521

                   idrFyddIkeMlG<-*
                    ++   d keM G
     C49C3.1   522 RRNQLADMKEMFG    534

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