Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47G2.5
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Query: C47G2.5 CE02168 status:Partially_confirmed TR:Q18696 protein_id:CAA88937.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SAPS SIT4 phosphatase-associated protein 485.5 4.3e-142 1
Radical_SAM Radical SAM superfamily 5.9 1.9 1
oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd sub 3.7 8.6 1
FliL Flagellar basal body-associated protein F 3.7 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FliL 1/1 176 186 .. 160 170 .] 3.7 8.2
oxidored_q6 1/1 480 493 .. 132 145 .] 3.7 8.6
Radical_SAM 1/1 624 659 .. 126 163 .] 5.9 1.9
SAPS 1/1 281 661 .. 1 606 [] 485.5 4.3e-142
Alignments of top-scoring domains:
FliL: domain 1 of 1, from 176 to 186: score 3.7, E = 8.2
*->kdVlFteFviq<-*
+dVl++eFv+q
C47G2.5 176 EDVLLNEFVVQ 186
oxidored_q6: domain 1 of 1, from 480 to 493: score 3.7, E = 8.6
*->PrPEailyaitall<-*
P+PE+i+++i+a
C47G2.5 480 PDPERIVEGILANR 493
Radical_SAM: domain 1 of 1, from 624 to 659: score 5.9, E = 1.9
*->eaiellreaGipvvivvdnivglpGendedleellell<-*
+ai+++++aGip++ + + ++ ++ +le++++l
C47G2.5 624 DAINRAKKAGIPNQ--KLLAILSADNTWTELEDIIHLY 659
SAPS: domain 1 of 1, from 281 to 661: score 485.5, E = 4.3e-142
*->neiLLdrkteqDWFLYQHmCLQlleFlkskdnfVdklLkHIgtsaIM
+e+LL+r+++ ++++l ++++f+dk+L++I+++aI+
C47G2.5 281 MECLLSRHFDL-----------TFSLL-QETKFFDKCLRNINLGAIE 315
DlLlkListdDkpespttgViqWLndqnLieklvdlLhpseedpldvqsn
+lL++L++++ +++++t++V++W++++nL+ek+vd++++se ++ d++++
C47G2.5 316 CLLENLVRIP-TTSEGTRIVKEWMISENLFEKIVDRMRESE-TD-DEKEC 362
aadfLCaiiriSrdknqtlqlqssiGPneLtrqLvSpetieqLldimled
+a+++C+i+r++rdk++++++++ +eL+++++++++i++++d+++++
C47G2.5 363 LAEVYCEILRELRDKLYIMESKV----DELHAKSMDETLIAKIADNLIVE 408
easPAEELvkggsaLvngvsIiieLIrknnSdvEydtvnllsttlethPp
e++PAEELvk++++++++++I++++I++n +
C47G2.5 409 EGCPAEELVKKSALISASAKILEAFIKTN--------------------F 438
tsrdPaiylgellrafaerLgdFhkLLlkpsadkdklPLLeTtlyGkleP
+s++Pa++l+e++r+++e+++++++L++++ +++++y+++++
C47G2.5 439 VSNAPAQQLEEIERNLIEERHYSYGLMRPC---------MDNDPYEHSYQ 479
PLGfeRlKIcELiAeLLhcsnmtllneprGEdIvreRDklRdklfehngs
P ++eR+ +++++A++L+++ +t+l++ +e+ngs
C47G2.5 480 P-DPERI-VEGILANRLPNILQTVLRD-----------------IEANGS 510
vesnllilvmededtndsttednneedknnnedandsndeeerkdkikkk
v+++ll+l++e+++tn+++t+
C47G2.5 511 VWQPLLRLIIELCNTNCMSTH----------------------------- 531
vkddnlvstkvdseeseaepvdeeeedakdeddedDdadesfEipydsek
ek
C47G2.5 532 ------------------------------------------------EK 533
ieeklRslPvvGDfLKIaLidtgvipriLDlFFeYPWNNFLHnvVediiq
i++++RslP+++ ++++++++pr+ ++LH++++++++
C47G2.5 534 IAVAFRSLPFIN-----LIKAAKMLPRA----------SVLHCLLVKVVI 568
qiLngpmdndyNEvdGesptdqqesEatlndLdttktveSppdsfLvkhL
++L++++++d+ +s+++++L
C47G2.5 569 LLLHSSFPCDE-------------------------------LSPAAEYL 587
lqecdsdvfLiekIleawkecalagDsisdfilrgnkdtyaksakkGlRl
l+e++ Li++I+++ a+s+++G+++
C47G2.5 588 LTEGG----LIQNIYDT-----------------------ATSPNPGSSV 610
GYMGHLtrIAeevvkfserypesniqiqqLlklsdlledekWeeyvedvL
+++G L++++++++++++r+++++i++q+L l++l++d++W+e L
C47G2.5 611 ACSG-LRSFNQNLGDAINRAKKAGIPNQKL--LAILSADNTWTE-----L 652
eetrekynv<-*
e+++++yn+
C47G2.5 653 EDIIHLYNL 661