Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C47G2.2
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Query:  C47G2.2  CE02166  locus:unc-130 fork head domain protein status:Partially_confirmed TR:Q18694 protein_id:CAA88935.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
Fork_head Fork head domain                              222.2    7.8e-63   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Fork_head   1/1     127   222 ..     1   101 []   222.2  7.8e-63

Alignments of top-scoring domains:
Fork_head: domain 1 of 1, from 127 to 222: score 222.2, E = 7.8e-63
                   *->KPPYSYiaLItmAIqqySpekrLtLseIYkfImdrFPYYRqnkqgWQ
                      KPPYSYiaLI+m I++ Spek+LtLseI++fI+++F YY+++  +WQ
     C47G2.2   127    KPPYSYIALIAMSILN-SPEKKLTLSEICEFIINKFEYYKEKFPAWQ 172

                   NSIRHNLSLNkcFiKVpRspdkpGKGsyWtldPeaedmFenkkkkgsflk
                   NSIRHNLSLN+cF+KV+R p++pGKG+yW+ldP+ edmF+n    gsfl+
     C47G2.2   173 NSIRHNLSLNDCFVKVARGPGNPGKGNYWALDPNCEDMFDN----GSFLR 218

                   rrrr<-*
                   rr+r
     C47G2.2   219 RRKR    222



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