Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C47G2.2
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Query: C47G2.2 CE02166 locus:unc-130 fork head domain protein status:Partially_confirmed TR:Q18694 protein_id:CAA88935.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Fork_head Fork head domain 222.2 7.8e-63 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fork_head 1/1 127 222 .. 1 101 [] 222.2 7.8e-63
Alignments of top-scoring domains:
Fork_head: domain 1 of 1, from 127 to 222: score 222.2, E = 7.8e-63
*->KPPYSYiaLItmAIqqySpekrLtLseIYkfImdrFPYYRqnkqgWQ
KPPYSYiaLI+m I++ Spek+LtLseI++fI+++F YY+++ +WQ
C47G2.2 127 KPPYSYIALIAMSILN-SPEKKLTLSEICEFIINKFEYYKEKFPAWQ 172
NSIRHNLSLNkcFiKVpRspdkpGKGsyWtldPeaedmFenkkkkgsflk
NSIRHNLSLN+cF+KV+R p++pGKG+yW+ldP+ edmF+n gsfl+
C47G2.2 173 NSIRHNLSLNDCFVKVARGPGNPGKGNYWALDPNCEDMFDN----GSFLR 218
rrrr<-*
rr+r
C47G2.2 219 RRKR 222