hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C47F8.1
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Query:  C47F8.1  CE17570    status:Partially_confirmed TR:O62111 protein_id:CAA15835.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    28.2    8.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1       4    51 ..     1    46 []    28.2  8.8e-06

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 4 to 51: score 28.2, E = 8.8e-06
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
                      f l +LP+  ++e+++ L  +dll+l++ S + r+lv++  + +++
     C47F8.1     4    FQLQQLPSLPIKEVFKSLGVCDLLNLCRSSNKSRRLVKKSlKDItFT 50

                   l<-*
                   l
     C47F8.1    51 L    51

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