Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C47A4.3
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Query:  C47A4.3  CE19739   Ser\/Thr protein phosphatase status:Partially_confirmed TR:Q9U3L7 protein_id:CAB62794.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
Metallophos Calcineurin-like phosphoesterase            141.4    1.6e-38   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Metallophos   1/1      54   252 ..     1   124 []   141.4  1.6e-38

Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 54 to 252: score 141.4, E = 1.6e-38
                   *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
                      ++i v+gD+Hg+f dll+l++ ++ ++  ++lflGD+vdrg+ s+e+
     C47A4.3    54    APIKVCGDIHGQFPDLLRLFHRGgWpPTANYLFLGDYVDRGRFSIET 100

                   llllfalklkapgpvylvrGNHDfdsgnsvy...............welf
                   + ll+a+k+k+p +++l+rGNH++ ++n+ y+++    + + +   +++f
     C47A4.3   101 IVLLLAYKVKFPCNFFLLRGNHECEFVNKTYgfyeecqkryqsvrmYAAF 150

                   leef.lllla.lvdgkillvHgglspd.......................
                   +++f++l+l +l+  kil++Hgglsp   ++   +  ++ +++ +++++
     C47A4.3   151 QDVFnWLPLTgLIATKILCMHGGLSPLmtkeftldtlrkierptegkegl 200

                   ...............................leellk.ngvdlvirGHtH
                     +  + ++ ++ ++  ++ ++ + + ++++++ l+ + ++dlv+r+H+
     C47A4.3   201 vadllwadpisglsgfmnnqrgagcgfgrdsVLNLCSeFQLDLVCRAHQV 250

                   .p<-*
                    +
     C47A4.3   251 vQ    252



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