Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C46F11.4
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Query: C46F11.4 CE17559 ATP-dependent RNA helicase status:Partially_confirmed TR:Q93382 protein_id:CAB03765.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DEAD DEAD/DEAH box helicase 276.5 4.5e-84 1
helicase_C Helicase conserved C-terminal domain 110.9 4.7e-30 1
Fork_head Fork head domain 4.7 8.3 1
ELO GNS1/SUR4 family 3.3 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Fork_head 1/1 259 283 .. 1 18 [. 4.7 8.3
DEAD 1/1 278 487 .. 1 207 [] 276.5 4.5e-84
helicase_C 1/1 535 605 .. 1 72 [] 110.9 4.7e-30
ELO 1/1 732 756 .. 1 28 [. 3.3 4.2
Alignments of top-scoring domains:
Fork_head: domain 1 of 1, from 259 to 283: score 4.7, E = 8.3
*->KPP........YSYiaLItmAIqqyS<-*
KPP++ + ++S+ L++ AI++ S
C46F11.4 259 KPPrpvcsfahFSFDKLLMEAIRK-S 283
DEAD: domain 1 of 1, from 278 to 487: score 276.5, E = 4.5e-84
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
+a++k+ +e+ptpiQa aip +l+grDvl++A+TGSGKT+A+l P++
C46F11.4 278 EAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAI 324
eallkg........pqalvlaPTRELAnQiyeelkklgkgl.lrvalltg
+++++++ + +++p a++++PTRELA Q+++e+kk++k +++ +++g
C46F11.4 325 VHIMDQpdlkagegPVAVIVVPTRELAIQVFQEAKKFCKVYnINPICAYG 374
g..skkeqrrklrkgpdilvaTPgrlldhlengkllekrlslknlkllVl
g+++ ++ +++ ++g++++v+TPgr++d++++g + ++ + +lV+
C46F11.4 375 GgsKWEQSNELQNEGAEMVVCTPGRIIDLVKMG-----ATNFLRTTFLVF 419
DEADrmldmgkahgFgpdleeilsrlpknrqtllfSATlpneverlaklf
DEADrm+dm gF+ ++++i ++ +++rq+l+fSAT+ ++verla+
C46F11.4 420 DEADRMFDM----GFEAQVKSISDHVRPDRQCLMFSATFKQKVERLARDA 465
lknpvevsvkse.ptplrikqk<-*
l +pv++++++++ ++ i+qk
C46F11.4 466 LVDPVRIVQGEVgEANADIEQK 487
helicase_C: domain 1 of 1, from 535 to 605: score 110.9, E = 4.7e-30
*->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
++++ lhG++ q+eR e l kFr+ ks++LvaTdvaarG+Di +++
C46F11.4 535 DFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAARGLDISEIR 580
lVInydlpwnpesyiQRiGRaGRaG<-*
+VIn+d+ +++++ ++RiGR+GRaG
C46F11.4 581 TVINFDMARDIDTHVHRIGRTGRAG 605
ELO: domain 1 of 1, from 732 to 756: score 3.3, E = 4.2
*->aellEkysdLndsssCFLkvfvPsidrP<-*
a ++ +++ L+ s F k f +++ rP
C46F11.4 732 ASGANRAQMLK---SAFQKSFQTTFQRP 756