Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C46C2.2
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Query: C46C2.2 CE03081 transport protein status:Partially_confirmed TR:Q18655 protein_id:CAA92589.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 28.2 2.1e-07 2
Multi_Drug_Res Small Multidrug Resistance protein 8.6 0.86 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Multi_Drug_Res 1/1 169 192 .. 68 91 .. 8.6 0.86
sugar_tr 1/2 117 258 .. 62 223 .. 27.2 4.4e-07
sugar_tr 2/2 405 490 .. 397 488 .] 3.5 2.8
Alignments of top-scoring domains:
Multi_Drug_Res: domain 1 of 1, from 169 to 192: score 8.6, E = 0.86
*->sGiGtvlttlvgillFgEslslkk<-*
+GiG+++t +vg+ F E +s ++
C46C2.2 169 TGIGIAGTMIVGWAYFSELVSPHQ 192
sugar_tr: domain 1 of 2, from 117 to 258: score 27.2, E = 4.4e-07
*->lGrliGslfaGklgdrfGRkksllialvlfviGallsgaapgytTiG
+G liG +++G+ +d +GRkk+++++ ++ + + ls+ +
C46C2.2 117 VGVLIGNIILGYVADQIGRKKTFILSMLIGIPSLSLSATFN------ 157
lwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRGalgslyqlait
+++ + ++R l+G+g+ g + + Y sE ++ R +l ++ ++a
C46C2.2 158 --SIAAFYIFRALTGIGIAGTMIVGWAYFSELVSPHQRFKLRTFSNWAN- 204
iGilvAaiiglglnktnndsalnswgWRiplglqlvpalllligl.lflP
A i+ ++++ ++ WR++ ++++v++l+ l+++ + lP
C46C2.2 205 -----ARIMLTLVALFTGE-------WRLSSHVSAVISLITLAIVyFILP 242
ESPRwLvekgkleeAr<-*
ES wL kg++eeA+
C46C2.2 243 ESHIWLRKKGRYEEAE 258
sugar_tr: domain 2 of 2, from 405 to 490: score 3.5, E = 2.8
*->algwGpipwvilsElFPtkvRskalalataanwlanfiigflfpyit
++ w p+ ++ sEl+Pt vR++ +a + ++++an+ ++ ++
C46C2.2 405 SIVWEPCYLCA-SELMPTDVRATSTASCSIVGRFANIGAS-----ML 445
gaiglalggyvflvfagllvlfilfvfffvPETkGrtLEeieelf<-*
+ ++ +++v + l++ ++ ++ff+ ETk+ +L++ +
C46C2.2 446 SGLKTVYEPGVHMISISLGLTNVVAAYFFLQETKNCSLDKAGTSA 490