Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C46C2.1
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Query: C46C2.1 CE03080 serine\/threonine kinase status:Partially_confirmed TR:Q18657 protein_id:CAA92591.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 224.1 2.1e-63 1
Herpes_U34 Herpesvirus virion protein U34 4.1 1.6 1
DUF607 Protein of unknown function, DUF607 3.8 3.7 1
AOX Alternative oxidase 1.8 6.4 1
DUF612 Protein of unknown function, DUF612 0.5 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
AOX 1/1 294 323 .. 300 329 .] 1.8 6.4
pkinase 1/1 344 607 .. 1 294 [] 224.1 2.1e-63
DUF612 1/1 938 964 .. 491 517 .] 0.5 7.9
Herpes_U34 1/1 1477 1490 .. 389 402 .] 4.1 1.6
DUF607 1/1 1679 1706 .. 205 235 .] 3.8 3.7
Alignments of top-scoring domains:
AOX: domain 1 of 1, from 294 to 323: score 1.8, E = 6.4
*->dpnpfslkspqgkkedddteelkeaaaPig<-*
d + ++++ + + ke++ ee+ +aa i+
C46C2.1 294 DMDKMVSEEERARKEQEKREEEEKAARRID 323
pkinase: domain 1 of 1, from 344 to 607: score 224.1, E = 2.1e-63
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek...r
+++ e+lG+Gsf +V+++ + +tg VA +l ++++++++++r
C46C2.1 344 LKFDEELGRGSFKTVFRGLDT-ETGVAVAWCELQ--ESKLNKTerqR 387
flrEiqilkrLsHpNIvrligvfed.....tddhlylvmEymegGdLfdy
f+ E+++lk L+HpNIvr+++++e + + +++ lv+E+m G L+ y
C46C2.1 388 FREEAEMLKDLQHPNIVRFYDYWESadlcgKRKYIVLVTELMTSGTLKMY 437
lrrnggplsekeakk.ialQilrGleYLHsng..ivHRDLKpeNILlden
l+r + +++ k ++k++++Qil+Gl++LH ++++++HRDLK +NI+++
C46C2.1 438 LKRFK-RINIKVVLKsWCRQILKGLSFLHTRNppVIHRDLKCDNIFITGT 486
dgtvKiaDFGLArllesssklttfvGTpwYmmAPEvilegrgysskvDvW
+g vKi+D GLA+l + s+++++ GTp++m APE e +y+ vDv+
C46C2.1 487 TGSVKIGDLGLATLKN-KSFAKSVIGTPEFM-APEM-YE-EMYDESVDVY 532
SlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpktr
++G+ L E++tg + P+s+
C46C2.1 533 AFGMCLLEMVTG--------------------------EYPYSE------ 550
idpleelfriikrpglrlplpsncSee...lkdLlkkcLnkDPskRpGsa
+++ + ++r + g +++++s+++ ++ ++++++c+++ ++R
C46C2.1 551 CMNPATIYRKVIS-GVKPECFSRIPAQypeIREIIDRCIRVRREERS--- 596
takeilnhpwf<-*
t k++l + +f
C46C2.1 597 TVKQLLVDDFF 607
DUF612: domain 1 of 1, from 938 to 964: score 0.5, E = 7.9
*->AvaaenkKKnKKdKkKkesEkaveEsv<-*
A+aa nK +K+K++ k v E
C46C2.1 938 AAAASTTTENKEEKRKSNKRKVVMEIL 964
Herpes_U34: domain 1 of 1, from 1477 to 1490: score 4.1, E = 1.6
*->GrkkaPtpaahsdV<-*
Gr +P p++h+d
C46C2.1 1477 GRETTPMPPDHPDL 1490
DUF607: domain 1 of 1, from 1679 to 1706: score 3.8, E = 3.7
*->qrKllkkldFDverYneLkelfaelesqavr<-*
q+Kll+k+++ +er L+++ ++ + ++v
C46C2.1 1679 QHKLLEKQRVEIER---LRSKIRVPRATSVN 1706