Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C45H4.17
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Query:  C45H4.17  CE25818   cytochrome P450 status:Partially_confirmed TR:O44706 protein_id:AAC25881.2

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
p450     Cytochrome P450                                369.9   4.3e-115   1
S6PP     Sucrose-6F-phosphate phosphohydrolase            2.3        7.4   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
S6PP       1/1     333   347 ..     1    15 [.     2.3      7.4
p450       1/1      26   491 ..     1   494 []   369.9 4.3e-115

Alignments of top-scoring domains:
S6PP: domain 1 of 1, from 333 to 347: score 2.3, E = 7.4
                   *->MDrLkgsaRLmIVSD<-*
                      MD+ +gs RL+  +D
    C45H4.17   333    MDKVIGSDRLITTAD    347

p450: domain 1 of 1, from 26 to 491: score 369.9, E = 4.3e-115
                   *->PpgP.plPlfGnllqlgrgkdilhsvltklrkkYGpifrlylGsrpv
                      PpgP plP+fGnll ++  +++ ++ + ++ kkYG+i+++++G +p
    C45H4.17    26    PPGPcPLPVFGNLLSIAN-PPPGYEAFERWTKKYGDIYTFWIGNTPH 71

                   vvlsgpelvkevLikkgeefsgrpdeawfatlsvpfrgkgilfsdgGprW
                   ++++  + +ke +i++ e   +  +++ ++ ++     +gi+ s+g ++W
    C45H4.17    72 IMINTWDKIKETYIRDAETYTNKVRLPALDLFR--GGEYGIIDSNG-ATW 118

                   kalRrlltptfrsfgmgklkslepriqeeaddlverlrktagepgsgrvi
                   +++Rr+ ++t+r+fg gk   + + i  e +d  +rl  + g+
    C45H4.17   119 REHRRFALSTMRDFGLGKN-LMQENILMEVQDVFARLDAKLGSE-----T 162

                   ditellsravlnvIcsilFgvrfdsledeealplvklvqelll...lvss
                   di e + +av nv++ +lFg r    + ++ +++++l + +  +++l+++
    C45H4.17   163 DIPEVFDHAVANVVNQLLFGYR---FVGPKESEYQELKRIIEAptdLFGK 209

                   pdhqlldlfp.lllylpgphlrk.fkearkelkdyldklieerretlddd
                   p   l   +p + +++p  +++ +fk+ r++ + +++k ie +r++ d +
    C45H4.17   210 PHMFLAMNIPvIAKLMPEFMYEGpFKDFRDTAFAFFNKQIEAHRQEVDLN 259

                   geeeekkksprdfldalllaknaemeeekdgereselsdeelaatvldll
                       + ++  +df   +l  +    ++e++g+  +++s+ +l   ++dl
    C45H4.17   260 ----DLNSESTDFVETFLKEQ---KRRESEGD-SETFSNVQLSNVCMDLW 301

                   fAGteTTsstlswaLylLakhPevqaklreEidevigdhrkeisptydDl
                   fAG  TT++t++wa+ + ++hPevq+k++eE+d vig++r    +t +D
    C45H4.17   302 FAGLNTTTNTITWAISYILHHPEVQDKVHEEMDKVIGSDR---LITTADK 348

                   qnmPyldavIkEtLRlypvvpnlllpRvatkDteigGylIPKGtlVivnl
                   +++Py +a+I+E++R + +vp l+l +++t+Dt+i+G+ IPKGt V+  +
    C45H4.17   349 NDLPYFNAFINEAQRGINIVP-LNLQHATTRDTVINGFKIPKGTGVVAQI 397

                   yslhrDpkvfpnPeeFdPeRFldengtaivnfkrksfaflPFGaGpRnCl
                   + ++ +++vfp+P++F+P+RF de g    + kr  +   PF+ G+R+C+
    C45H4.17   398 STVMNNEEVFPDPHTFNPDRFIDEHG----KLKRVEE-LAPFSVGKRSCP 442

                   GerlArmElflfLatlLqrFeleplpgvdpppidetpiisglvlppkpyk
                   Ge+lArmElflf+a +L r++  p ++ +pp +d+ +   g +  p +++
    C45H4.17   443 GEGLARMELFLFIANFLNRYKIYP-SKEGPPSMDKSN---GALIAPRLFS 488

                   lkf<-*
                    ++
    C45H4.17   489 ATL    491



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