Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C42C1.11
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Query: C42C1.11 CE24840 peptidase status:Confirmed TR:O44969 protein_id:AAB97552.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M1 Peptidase family M1 427.6 1.2e-147 1
Peptidase_M4 Thermolysin metallopeptidase, catalytic 5.7 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M4 1/1 293 306 .. 152 165 .] 5.7 3
Peptidase_M1 1/1 15 390 .. 1 436 [] 427.6 1.2e-147
Alignments of top-scoring domains:
Peptidase_M4: domain 1 of 1, from 293 to 306: score 5.7, E = 3
*->DVVgHElTHGVTEq<-*
+V++HE++H T +
C42C1.11 293 NVIAHEISHSWTGN 306
Peptidase_M1: domain 1 of 1, from 15 to 390: score 427.6, E = 1.2e-147
*->LPttvkPlhYdLtlkpkfgnlpekpnnftFsGsvtItltnqatkaat
+++v+++hY L++k+ ++++k ++ G+v+Itl +++ ++t
C42C1.11 15 -YEQVTVSHYALKWKV---DFEKK----HIAGDVSITL--DVK-QDT 50
deIvLhakdltisstgegvrvtlvlvngsqklpesvefslqsetdflavd
IvL+++dl ++s v+l+l+ ++k++ ++e+++ +
C42C1.11 51 ERIVLDTRDLSVQS------VALNLNGEPKKAGFTLEDNQALGQ------ 88
dnkekltinlpealsagqggpytLkIeyegklndismlGfYrseYtdgkd
kl+i++++ +s ++ +L+I+ye+++n +l+f+ e+t+++
C42C1.11 89 ----KLVITTESLKSGDR---PVLEIKYESSNNA-AALQFLTAEQTTDRV 130
getkymatTQfeeptdARraFPCfDEPafKATFtitiihp.kgttalSNm
+ + +++++++ AR+++PC+D+P++K+T+++ +++p t+++S +
C42C1.11 131 AP----YLFSQCQAINARSIVPCMDTPSVKSTYEAEVCVPiGLTCLMSAI 176
pvisttkdddgptrvittFetTpkMStYLlAfiVGeleyietetkdgysa
++st ++++ r+i+ F++++ +++YLlA++VG+le e+ +
C42C1.11 177 GQGSTPSECGK--RTIFSFKQPVSIPSYLLAIVVGHLE--RKEISER--- 219
revpvrvyarpgaknagqgqyalevtkkllefyedyfgipYplpKlDqvA
+ v+a+p++++ + y++ + + ++ ++pY+++++D+v+
C42C1.11 220 ----CAVWAEPSQAE--ASFYEFA-ETEKILKVAEDVAGPYVWGRYDLVV 262
vP.dFsaGAMENWGLiTyrepaLLydprsssnsdkqrVaeviaHELAHQW
+P +F++G+MEN+ ++T+ +p+LL+++rs+ n viaHE++H+W
C42C1.11 263 LPaTFPFGGMENP-CLTFITPTLLAGDRSLVN--------VIAHEISHSW 303
FGNLVTmkWWddLWLNEGFAtymEylgtdelggepewnieaqfvlrddva
+GNLVT+ +W+++WLNEGF++++E++++++++ge+e+++e+ +++ +a
C42C1.11 304 TGNLVTNFSWEHFWLNEGFTVFLERKIHGKMYGELERQFESESGYE--EA 351
qlalasDslgsshPitnklvevntpaeiseiFdsaitYaKG<-*
+ D++g+ h +t klv+++ +a+ ++ F+ +++Y+KG
C42C1.11 352 LVRTVNDVFGPDHEYT-KLVQNLGNADPDDAFS-SVPYEKG 390