Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C37H5.6a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C37H5.6a CE08630 status:Confirmed TN:AAM29668 protein_id:AAM29668.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Adenylsucc_synt Adenylosuccinate synthetase 769.1 1.8e-227 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Adenylsucc_synt 1/1 30 454 .. 1 431 [] 769.1 1.8e-227
Alignments of top-scoring domains:
Adenylsucc_synt: domain 1 of 1, from 30 to 454: score 769.1, E = 1.8e-227
*->rnvVVlGsQWGDEGKGKIVDlLseraD..vVvRyQGGnNAGHTiViD
++V lG+QWGDEGKGKI D+L e+ + +v +R+QGGnNAGHT+V++
C37H5.6a 30 TVSVLLGAQWGDEGKGKIIDYLIENHKinVTARCQGGNNAGHTVVAN 76
GvkYkLHLiPSGilnpkvtcvIGNGVVvdlpaLfkElekLeqkGikdvre
G+kY++H++PSGi+ p + +vIGNGVVv+l a+f+El+ + +++++
C37H5.6a 77 GRKYDFHILPSGIISPTCFNVIGNGVVVNLDAFFSELAHNGILEESGWEK 126
RLfISdRAHLIldYHqalDalrEaerSqsqgkkkIGTTKkGIGPAYsDKA
R+ IS+ AHL++ H +D+ +E ++ k+kIGTT +GIGP+Ys+K
C37H5.6a 127 RIMISSEAHLVFGVHSQVDGRQEDSL---AAKNKIGTTNRGIGPTYSSKC 173
aRrGLRVgDLfddfWeeFaeKlkrlleyhNfvLqkrygteeidveaiLde
R G+RV+DL df eeF+eK++rl+e+ ++k +++ e++v +L+
C37H5.6a 174 FRNGIRVADLMADF-EEFSEKYRRLVEH----YKKQFPSIEVNVDEELAK 218
ykeyaeqlk..pmVvDvvvfLdeAlkGegkkiLfEGAqgtmLDiDhGTYP
+k +e l++ ++V D+v f +e + +gk +L+EGA+g++LDiD+GTYP
C37H5.6a 219 FKQHREKLAelKLVGDTVGFIHEQRN-AGKQVLVEGANGALLDIDFGTYP 267
FVTSSNttaGGvatGlGigPrkIgyVlGvvKAYTTRVGaGPFPTElfDEi
+VTSSN+t+GG++tG G++P+++g+V+GvvKAY TRVG+GPFPTElfD
C37H5.6a 268 YVTSSNSTVGGACTGIGVPPTAVGNVIGVVKAYQTRVGTGPFPTELFDSD 317
GdfLrevGhEfGvTTGRkRRcGWfDaVvlRyarriNgitgLcLTKLDVLD
G++L+++G E+GvTTGRkRRcGW D+ +lR++ +iNg+t+++LTKLD+LD
C37H5.6a 318 GEKLQTIGKEVGVTTGRKRRCGWIDLFLLRRSAMINGYTAIALTKLDILD 367
gleEIKicVaYklpdGkrIeyfPasleaLakvEpiYEtlPGWkedttgvt
++ +IK++V+Ykl +G+++ + Pa ++a+ + E++Y+++ GW+e+t gv+
C37H5.6a 368 TFPTIKVAVGYKL-NGQVLSSPPAQANAWGAIEVEYKEFEGWNEPTVGVR 416
swedLPenAknYikrIEelvGVPisiiSVGPdReetil<-*
++edLPe +++Y+k+IE++ VPi++i+VG +Re++i+
C37H5.6a 417 KFEDLPEKCRQYVKFIEDFIKVPIVYIGVGAERESLIV 454