Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C37E2.4
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Query:  C37E2.4  CE08623  locus:ceh-36 Homeobox domain status:Partially_confirmed SW:Q93352 protein_id:CAB02821.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
homeobox Homeobox domain                                 85.1    1.4e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
homeobox   1/1      56   115 ..     1    57 []    85.1  1.4e-21

Alignments of top-scoring domains:
homeobox: domain 1 of 1, from 56 to 115: score 85.1, E = 1.4e-21
                   *->RrkRTtFtpeQleeLEkeFqknpYPsreeReeLAkkLgLterqVk..
                      Rr RT+F + Ql++LEk+F++++YP++++Re LAk ++L++ +V+
     C37E2.4    56    RRERTSFNRGQLDQLEKVFRETQYPDVHRREALAKAINLPDGRVQvi 102

                   .vWFQNRRaKwKk<-*
                   +vWF NRRaK ++
     C37E2.4   103 tVWFKNRRAKDRN    115



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