Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C37E2.4
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Query: C37E2.4 CE08623 locus:ceh-36 Homeobox domain status:Partially_confirmed SW:Q93352 protein_id:CAB02821.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
homeobox Homeobox domain 85.1 1.4e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
homeobox 1/1 56 115 .. 1 57 [] 85.1 1.4e-21
Alignments of top-scoring domains:
homeobox: domain 1 of 1, from 56 to 115: score 85.1, E = 1.4e-21
*->RrkRTtFtpeQleeLEkeFqknpYPsreeReeLAkkLgLterqVk..
Rr RT+F + Ql++LEk+F++++YP++++Re LAk ++L++ +V+
C37E2.4 56 RRERTSFNRGQLDQLEKVFRETQYPDVHRREALAKAINLPDGRVQvi 102
.vWFQNRRaKwKk<-*
+vWF NRRaK ++
C37E2.4 103 tVWFKNRRAKDRN 115