Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C37C3.9
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Query: C37C3.9 CE27368 status:Partially_confirmed TR:Q22917 protein_id:AAC25864.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BTB BTB/POZ domain 30.7 4.6e-07 1
Pneumo_ncap Pneumovirus nucleocapsid protein 3.7 2.5 1
TP2 Nuclear transition protein 2 1.6 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pneumo_ncap 1/1 89 105 .. 376 392 .] 3.7 2.5
BTB 1/1 58 157 .. 15 137 .] 30.7 4.6e-07
TP2 1/1 260 279 .. 94 114 .. 1.6 9.7
Alignments of top-scoring domains:
Pneumo_ncap: domain 1 of 1, from 89 to 105: score 3.7, E = 2.5
*->rEaiknqLNikDedsed<-*
+E + qLNi De +ed
C37C3.9 89 LEGAIKQLNILDESPED 105
BTB: domain 1 of 1, from 58 to 157: score 30.7, E = 4.6e-07
*->lvvgdgegknevtSgkefkAHKavLaAcSpYFkalFtgnfkesttee
+ vg+ +++++ a+ a S+YF+ l++++f +
C37C3.9 58 IIVGN----------QKYFVDPAIFARNSDYFRILMENKF-----FL 89
essviseielddvspedfealLefiYtgelsitqeqksPssckseenvee
e ++ ++++ d sped +l+ +i + +l + + ++e+nv
C37C3.9 90 EGAIK-QLNILDESPEDILKLITVISPNSLGLYPDV------IDEQNVCT 132
lLelAadklqipslvdaCeefliknl<-*
+L+l dk+ + l++ C+++l++
C37C3.9 133 VLRLC-DKYLMTNLKQNCVDYLKDYN 157
TP2: domain 1 of 1, from 260 to 279: score 1.6, E = 9.7
*->hhsPsRPtthsCscpKnRKnl<-*
h +++RP + s +KnRK +
C37C3.9 260 HQCSMRP-PARQSRSKNRKSF 279