Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C37C3.2a
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Query: C37C3.2a CE27367 status:Confirmed TN:AAC25859 protein_id:AAC25859.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
eIF5_eIF2B Domain found in IF2B/IF5 280.3 2.5e-80 1
W2 eIF4-gamma/eIF5/eIF2-epsilon 126.7 3.6e-38 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
eIF5_eIF2B 1/1 1 128 [. 1 138 [] 280.3 2.5e-80
W2 1/1 295 380 .. 1 87 [] 126.7 3.6e-38
Alignments of top-scoring domains:
eIF5_eIF2B: domain 1 of 1, from 1 to 128: score 280.3, E = 2.5e-80
*->rafnIeRekNpdrvvgdksFYRFemPppqvkiEGkGNGiKTiivNfs
+a N++r v d +FYR++mP++++k+EGkGNGiKT+i+N+s
C37C3.2a 1 MA------LNVNRAVAD-PFYRYKMPKLSAKVEGKGNGIKTVISNMS 40
DIAkaLnRppelhllKYLlaELGtaGsiDgkngRlivnGrftpkkLqdvL
+IAkaL+Rpp+ +++KY+++ELG+++++D+kn+R+ivnG+++++kLqd+L
C37C3.2a 41 EIAKALERPPM-YPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDIL 89
ddYIkeYVlCheCksPdTelikekkdRliflkCkACGarrp<-*
d++Ik++VlC++C++P+T+l+++ +++i kCkACG++++
C37C3.2a 90 DGFIKKFVLCKSCENPETQLFVR--KNNIKSKCKACGCSFD 128
W2: domain 1 of 1, from 295 to 380: score 126.7, E = 3.6e-38
*->eeeqidlLlaiEefcvkleeelvikllakiLkslYDaDileEeaIlk
+++q++lL+++E++++k+e+el +++ a+i+kslYD+D++eE++ ++
C37C3.2a 295 KKAQRYLLGGVEQVIHKHEAEL-LSKSAHIIKSLYDEDVCEEDSLIS 340
WyekadsadeskEgkskvrkqakkFitWLkeAeEEEseee<-*
W+ek++s+++sk++++k+ ++ ++ ++WLkeAeEE +ee+
C37C3.2a 341 WGEKPSSKYVSKSFAKKIIENSQPVLNWLKEAEEETEEES 380