Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C35E7.9
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Query:  C35E7.9  CE17522    status:Partially_confirmed TR:O61765 protein_id:AAC17524.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
MSP_domain MSP (Major sperm protein) domain             118.0    2.6e-33   1
Bmp        Basic membrane protein                         4.5        1.8   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Bmp          1/1      10    46 ..     1    32 [.     4.5      1.8
MSP_domain   1/1     192   301 .]     1   138 []   118.0  2.6e-33

Alignments of top-scoring domains:
Bmp: domain 1 of 1, from 10 to 46: score 4.5, E = 1.8
                   *->lifllalllagCfssgkkeqTtqttt......akskiv<-*
                      +i++++  lagC++++kk+ ++  t++   ++a+sk +
     C35E7.9    10    GITIAGWILAGCGGKKKKD-GKSSTAsaaapkADSKMK    46

MSP_domain: domain 1 of 1, from 192 to 301: score 118.0, E = 2.6e-33
                   *->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
                      +++++Pp+ + +f++  +      +++l+ltN++dk+i+FK+Kt++n
     C35E7.9   192    HITIDPPGDL-MFKA--DQQ---EQKKLKLTNTHDKKIMFKIKTSDN 232

                   klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
                   ++Y ++PvyG +ePg+s+n++ t        r+k + k     + K+v+
     C35E7.9   233 QVYLMNPVYGTVEPGKSANLTLT--------RNKAPAK-----EAKLVIV 269

                   yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
                    ++++++d+d       ++ fk+ +++g   g+++i++  +
     C35E7.9   270 NSVFSGDDKD------LAKSFKTGKPTG---GQVTIMLNGK    301



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